miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 67548 0.66 0.963828
Target:  5'- cCCUccgCCCGGGcc-GCGCCGCaCCa- -3'
miRNA:   3'- -GGAaaaGGGUCCucuUGCGGCG-GGcc -5'
11144 3' -55.8 NC_002794.1 + 93081 0.66 0.963503
Target:  5'- gCCUgUUCCCGGGcu-GCGgccucucCUGCCUGGa -3'
miRNA:   3'- -GGAaAAGGGUCCucuUGC-------GGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 4125 0.66 0.96049
Target:  5'- cCCguucgUUCCCGGGGucuugcGAGC-CC-CCCGGa -3'
miRNA:   3'- -GGaa---AAGGGUCCU------CUUGcGGcGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 116618 0.66 0.96049
Target:  5'- cUCgucgCCCAGGcgguAGAGCggcaggggcccgGCCGUCCGGc -3'
miRNA:   3'- -GGaaaaGGGUCC----UCUUG------------CGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 104423 0.66 0.96049
Target:  5'- gCCUcggCCgCcGGcccGGACGCCGCCgCGGg -3'
miRNA:   3'- -GGAaaaGG-GuCCu--CUUGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 112323 0.66 0.96049
Target:  5'- gCCgacggCgGGGAGcGCGCCGgCCGGc -3'
miRNA:   3'- -GGaaaagGgUCCUCuUGCGGCgGGCC- -5'
11144 3' -55.8 NC_002794.1 + 132884 0.66 0.956945
Target:  5'- aCCggaaUCCC------GCGCCGCCCGGa -3'
miRNA:   3'- -GGaaa-AGGGuccucuUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 107306 0.66 0.956945
Target:  5'- ----cUCCUcGcGGGGGCGCCGUCCGc -3'
miRNA:   3'- ggaaaAGGGuC-CUCUUGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 69782 0.66 0.956945
Target:  5'- cCCgacgagCCAcGAGAGCGCCGCCgCGu -3'
miRNA:   3'- -GGaaaag-GGUcCUCUUGCGGCGG-GCc -5'
11144 3' -55.8 NC_002794.1 + 152089 0.66 0.956945
Target:  5'- cUCUUgcCCUGGGAuacCGCCGUCUGGg -3'
miRNA:   3'- -GGAAaaGGGUCCUcuuGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 63575 0.66 0.949219
Target:  5'- aCCUUccgccCCCGGGAGGugaaGCuccuCCGCaCCGGa -3'
miRNA:   3'- -GGAAaa---GGGUCCUCU----UGc---GGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 64598 0.66 0.949219
Target:  5'- aCUUcUUCCC-GGAGGACGUcuuCGuCCCGa -3'
miRNA:   3'- gGAA-AAGGGuCCUCUUGCG---GC-GGGCc -5'
11144 3' -55.8 NC_002794.1 + 111610 0.66 0.949219
Target:  5'- ----cUCCCAGGccGGcGGgGCCGCCgCGGc -3'
miRNA:   3'- ggaaaAGGGUCC--UC-UUgCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 141442 0.66 0.949219
Target:  5'- gCCgggggCgCCGGGAGcGGCGCggCGUCCGGa -3'
miRNA:   3'- -GGaaaa-G-GGUCCUC-UUGCG--GCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 66686 0.66 0.949219
Target:  5'- cCCggcgcCCCAGGcaaAGcguACGCCgcGCCCGGc -3'
miRNA:   3'- -GGaaaa-GGGUCC---UCu--UGCGG--CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 183730 0.66 0.949219
Target:  5'- cCCgcacgcgCCCAGcAGGAUcagGCCGCCCGc -3'
miRNA:   3'- -GGaaaa---GGGUCcUCUUG---CGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 153783 0.66 0.949219
Target:  5'- aCCgcUUUCCCcgauccggaugAGGAcGAGaGCCGgCCCGGa -3'
miRNA:   3'- -GGa-AAAGGG-----------UCCU-CUUgCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 151975 0.67 0.945031
Target:  5'- uCCUcggCCCGGGAcGugGucuaCCGCCCGa -3'
miRNA:   3'- -GGAaaaGGGUCCUcUugC----GGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 55252 0.67 0.945031
Target:  5'- ------aCgAGGAGGACGCCGaagagCCGGg -3'
miRNA:   3'- ggaaaagGgUCCUCUUGCGGCg----GGCC- -5'
11144 3' -55.8 NC_002794.1 + 84059 0.67 0.945031
Target:  5'- gCCgccUCCCAgccGGAGAcgacgaccgccGCGCCGCCg-- -3'
miRNA:   3'- -GGaaaAGGGU---CCUCU-----------UGCGGCGGgcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.