Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11144 | 3' | -55.8 | NC_002794.1 | + | 70732 | 0.75 | 0.577958 |
Target: 5'- uCCgcca-CCAGGAGcAGCGCgaGCCCGGg -3' miRNA: 3'- -GGaaaagGGUCCUC-UUGCGg-CGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 86892 | 0.75 | 0.577958 |
Target: 5'- cCCga-UCCCGGcGGGGcCGCCGaCCCGGu -3' miRNA: 3'- -GGaaaAGGGUC-CUCUuGCGGC-GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 153265 | 0.74 | 0.637256 |
Target: 5'- aCCUgg-CCCAGGucuACGCCGaCCCGu -3' miRNA: 3'- -GGAaaaGGGUCCucuUGCGGC-GGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 121634 | 0.73 | 0.657066 |
Target: 5'- aCgagUCuCCGGGAGAACGCCGUcgCCGu -3' miRNA: 3'- gGaaaAG-GGUCCUCUUGCGGCG--GGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 8031 | 0.73 | 0.666947 |
Target: 5'- cUCUUgugUCCCgAGGAaGACGCCGCaCCGu -3' miRNA: 3'- -GGAAa--AGGG-UCCUcUUGCGGCG-GGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 81402 | 0.73 | 0.647167 |
Target: 5'- uCCgg-UCCCGGcucGGGAGCuGCuCGCCCGGc -3' miRNA: 3'- -GGaaaAGGGUC---CUCUUG-CG-GCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 101200 | 0.72 | 0.715794 |
Target: 5'- ----cUCCUggAGGAGGcgGCCGCCCGGc -3' miRNA: 3'- ggaaaAGGG--UCCUCUugCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 15185 | 0.72 | 0.734922 |
Target: 5'- gCCggagaCCGGGuGAACGaCCGCCCGc -3' miRNA: 3'- -GGaaaagGGUCCuCUUGC-GGCGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 186203 | 0.72 | 0.715794 |
Target: 5'- aCCgcgggcCCCAGGgcAGAugGCgGUCCGGg -3' miRNA: 3'- -GGaaaa--GGGUCC--UCUugCGgCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 113222 | 0.71 | 0.762963 |
Target: 5'- uCCUccgCCCGGGcGAcCGCCGUCCaGGa -3' miRNA: 3'- -GGAaaaGGGUCCuCUuGCGGCGGG-CC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 107255 | 0.71 | 0.762963 |
Target: 5'- aCCUgg-CCCGGcGGAgccGCGCCGUCCGc -3' miRNA: 3'- -GGAaaaGGGUCcUCU---UGCGGCGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 19484 | 0.71 | 0.752783 |
Target: 5'- gCCggucgCCCGcaccgacgacggcGGAGGucGCGCCGCUCGGa -3' miRNA: 3'- -GGaaaa-GGGU-------------CCUCU--UGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 127064 | 0.7 | 0.815886 |
Target: 5'- gCUaugUCUguGGAGAGCGCC-CgCCGGa -3' miRNA: 3'- gGAaa-AGGguCCUCUUGCGGcG-GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 194373 | 0.7 | 0.835571 |
Target: 5'- cCCgcgugCCCAGccacaccagcuGCGCCGCCCGGu -3' miRNA: 3'- -GGaaaa-GGGUCcucu-------UGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 131625 | 0.69 | 0.863196 |
Target: 5'- aCCUc-UCCCGGGAGcguCGUcgCGCCCGu -3' miRNA: 3'- -GGAaaAGGGUCCUCuu-GCG--GCGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 101014 | 0.69 | 0.848144 |
Target: 5'- gCCU--UCCUgucGGGGGACGCgGgCCGGg -3' miRNA: 3'- -GGAaaAGGGu--CCUCUUGCGgCgGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 57531 | 0.69 | 0.870432 |
Target: 5'- ----cUCagcaAGGAGAACGCCGUCaCGGc -3' miRNA: 3'- ggaaaAGgg--UCCUCUUGCGGCGG-GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 76950 | 0.68 | 0.897323 |
Target: 5'- ------aCCGcGGAG-ACGCCGUCCGGc -3' miRNA: 3'- ggaaaagGGU-CCUCuUGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 154312 | 0.68 | 0.890916 |
Target: 5'- gCCUc--CUCGGGAGAGCGgCGucggucguCCCGGg -3' miRNA: 3'- -GGAaaaGGGUCCUCUUGCgGC--------GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 124159 | 0.68 | 0.897323 |
Target: 5'- uCCgcggggCCCGGGAGAGCGUCGgggaggggaCUGGu -3' miRNA: 3'- -GGaaaa--GGGUCCUCUUGCGGCg--------GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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