Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11144 | 3' | -55.8 | NC_002794.1 | + | 181056 | 0.68 | 0.903512 |
Target: 5'- gCUcgUCUC-GGAGAACGCgGgUCCGGg -3' miRNA: 3'- gGAaaAGGGuCCUCUUGCGgC-GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 112236 | 0.68 | 0.908896 |
Target: 5'- -----gUCCAGGGccgccgcGAACGCCGCCggCGGg -3' miRNA: 3'- ggaaaaGGGUCCU-------CUUGCGGCGG--GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 64792 | 0.68 | 0.909483 |
Target: 5'- gCCggUUCCgCGGcGAGcGACGCCGCggaCGGc -3' miRNA: 3'- -GGaaAAGG-GUC-CUC-UUGCGGCGg--GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 189297 | 0.68 | 0.897323 |
Target: 5'- -----gCCCAGGAGGugGUCGUgcaguUCGGg -3' miRNA: 3'- ggaaaaGGGUCCUCUugCGGCG-----GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 76950 | 0.68 | 0.897323 |
Target: 5'- ------aCCGcGGAG-ACGCCGUCCGGc -3' miRNA: 3'- ggaaaagGGU-CCUCuUGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 123761 | 0.68 | 0.909483 |
Target: 5'- gCCgcUUCCCGGGcguGGACGCC-UCCGu -3' miRNA: 3'- -GGaaAAGGGUCCu--CUUGCGGcGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 119816 | 0.68 | 0.890916 |
Target: 5'- gCguggCUCAGGAGAuaguACGCCGUauaCCGGu -3' miRNA: 3'- gGaaaaGGGUCCUCU----UGCGGCG---GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 143849 | 0.68 | 0.909483 |
Target: 5'- gCCUccggCCAGGcGAuCGCCGCCgCGGc -3' miRNA: 3'- -GGAaaagGGUCCuCUuGCGGCGG-GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 42773 | 0.68 | 0.915232 |
Target: 5'- aCUgc-UCCAGGAGcGCGacuCCGUCCGGc -3' miRNA: 3'- gGAaaaGGGUCCUCuUGC---GGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 124159 | 0.68 | 0.897323 |
Target: 5'- uCCgcggggCCCGGGAGAGCGUCGgggaggggaCUGGu -3' miRNA: 3'- -GGaaaa--GGGUCCUCUUGCGGCg--------GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 8162 | 0.68 | 0.890916 |
Target: 5'- uCCUUcUCCCccGGGcccGGCGucCCGCCCGGu -3' miRNA: 3'- -GGAAaAGGGucCUC---UUGC--GGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 154312 | 0.68 | 0.890916 |
Target: 5'- gCCUc--CUCGGGAGAGCGgCGucggucguCCCGGg -3' miRNA: 3'- -GGAaaaGGGUCCUCUUGCgGC--------GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 3342 | 0.67 | 0.940623 |
Target: 5'- aCCggccUCCCacgGGGGGGugGCCGauuCUGGg -3' miRNA: 3'- -GGaaa-AGGG---UCCUCUugCGGCg--GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 13869 | 0.67 | 0.945031 |
Target: 5'- gCCgcgaCCCGGuucuccGAGCGCCGCCCu- -3' miRNA: 3'- -GGaaaaGGGUCcu----CUUGCGGCGGGcc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 121025 | 0.67 | 0.9446 |
Target: 5'- ----cUCCCAagaggccGGAGAGCGgCGCgUCGGg -3' miRNA: 3'- ggaaaAGGGU-------CCUCUUGCgGCG-GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 169659 | 0.67 | 0.945031 |
Target: 5'- aCCg--UUCCAGGAGAACGUUuauauaaaCUCGGg -3' miRNA: 3'- -GGaaaAGGGUCCUCUUGCGGc-------GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 86771 | 0.67 | 0.940623 |
Target: 5'- ----aUCgCCGGGAacGAACcgGCCGCuCCGGa -3' miRNA: 3'- ggaaaAG-GGUCCU--CUUG--CGGCG-GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 156569 | 0.67 | 0.940623 |
Target: 5'- gCCUg-UCUgAgagcGGAGAugGCCGaCCUGGg -3' miRNA: 3'- -GGAaaAGGgU----CCUCUugCGGC-GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 14699 | 0.67 | 0.940623 |
Target: 5'- uCCUgacggCguGGGGAGCGCUGCUCGcGg -3' miRNA: 3'- -GGAaaag-GguCCUCUUGCGGCGGGC-C- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 34314 | 0.67 | 0.940623 |
Target: 5'- uCCUcgaCCCGGGAGGcCGuCCGCaaGGc -3' miRNA: 3'- -GGAaaaGGGUCCUCUuGC-GGCGggCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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