miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 70732 0.75 0.577958
Target:  5'- uCCgcca-CCAGGAGcAGCGCgaGCCCGGg -3'
miRNA:   3'- -GGaaaagGGUCCUC-UUGCGg-CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 86892 0.75 0.577958
Target:  5'- cCCga-UCCCGGcGGGGcCGCCGaCCCGGu -3'
miRNA:   3'- -GGaaaAGGGUC-CUCUuGCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 153265 0.74 0.637256
Target:  5'- aCCUgg-CCCAGGucuACGCCGaCCCGu -3'
miRNA:   3'- -GGAaaaGGGUCCucuUGCGGC-GGGCc -5'
11144 3' -55.8 NC_002794.1 + 81402 0.73 0.647167
Target:  5'- uCCgg-UCCCGGcucGGGAGCuGCuCGCCCGGc -3'
miRNA:   3'- -GGaaaAGGGUC---CUCUUG-CG-GCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 121634 0.73 0.657066
Target:  5'- aCgagUCuCCGGGAGAACGCCGUcgCCGu -3'
miRNA:   3'- gGaaaAG-GGUCCUCUUGCGGCG--GGCc -5'
11144 3' -55.8 NC_002794.1 + 8031 0.73 0.666947
Target:  5'- cUCUUgugUCCCgAGGAaGACGCCGCaCCGu -3'
miRNA:   3'- -GGAAa--AGGG-UCCUcUUGCGGCG-GGCc -5'
11144 3' -55.8 NC_002794.1 + 186203 0.72 0.715794
Target:  5'- aCCgcgggcCCCAGGgcAGAugGCgGUCCGGg -3'
miRNA:   3'- -GGaaaa--GGGUCC--UCUugCGgCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 101200 0.72 0.715794
Target:  5'- ----cUCCUggAGGAGGcgGCCGCCCGGc -3'
miRNA:   3'- ggaaaAGGG--UCCUCUugCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 15185 0.72 0.734922
Target:  5'- gCCggagaCCGGGuGAACGaCCGCCCGc -3'
miRNA:   3'- -GGaaaagGGUCCuCUUGC-GGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 19484 0.71 0.752783
Target:  5'- gCCggucgCCCGcaccgacgacggcGGAGGucGCGCCGCUCGGa -3'
miRNA:   3'- -GGaaaa-GGGU-------------CCUCU--UGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 113222 0.71 0.762963
Target:  5'- uCCUccgCCCGGGcGAcCGCCGUCCaGGa -3'
miRNA:   3'- -GGAaaaGGGUCCuCUuGCGGCGGG-CC- -5'
11144 3' -55.8 NC_002794.1 + 107255 0.71 0.762963
Target:  5'- aCCUgg-CCCGGcGGAgccGCGCCGUCCGc -3'
miRNA:   3'- -GGAaaaGGGUCcUCU---UGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 127064 0.7 0.815886
Target:  5'- gCUaugUCUguGGAGAGCGCC-CgCCGGa -3'
miRNA:   3'- gGAaa-AGGguCCUCUUGCGGcG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 194373 0.7 0.835571
Target:  5'- cCCgcgugCCCAGccacaccagcuGCGCCGCCCGGu -3'
miRNA:   3'- -GGaaaa-GGGUCcucu-------UGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 101014 0.69 0.848144
Target:  5'- gCCU--UCCUgucGGGGGACGCgGgCCGGg -3'
miRNA:   3'- -GGAaaAGGGu--CCUCUUGCGgCgGGCC- -5'
11144 3' -55.8 NC_002794.1 + 131625 0.69 0.863196
Target:  5'- aCCUc-UCCCGGGAGcguCGUcgCGCCCGu -3'
miRNA:   3'- -GGAaaAGGGUCCUCuu-GCG--GCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 57531 0.69 0.870432
Target:  5'- ----cUCagcaAGGAGAACGCCGUCaCGGc -3'
miRNA:   3'- ggaaaAGgg--UCCUCUUGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 154312 0.68 0.890916
Target:  5'- gCCUc--CUCGGGAGAGCGgCGucggucguCCCGGg -3'
miRNA:   3'- -GGAaaaGGGUCCUCUUGCgGC--------GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 119816 0.68 0.890916
Target:  5'- gCguggCUCAGGAGAuaguACGCCGUauaCCGGu -3'
miRNA:   3'- gGaaaaGGGUCCUCU----UGCGGCG---GGCC- -5'
11144 3' -55.8 NC_002794.1 + 8162 0.68 0.890916
Target:  5'- uCCUUcUCCCccGGGcccGGCGucCCGCCCGGu -3'
miRNA:   3'- -GGAAaAGGGucCUC---UUGC--GGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.