Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11144 | 3' | -55.8 | NC_002794.1 | + | 124159 | 0.68 | 0.897323 |
Target: 5'- uCCgcggggCCCGGGAGAGCGUCGgggaggggaCUGGu -3' miRNA: 3'- -GGaaaa--GGGUCCUCUUGCGGCg--------GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 189297 | 0.68 | 0.897323 |
Target: 5'- -----gCCCAGGAGGugGUCGUgcaguUCGGg -3' miRNA: 3'- ggaaaaGGGUCCUCUugCGGCG-----GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 76950 | 0.68 | 0.897323 |
Target: 5'- ------aCCGcGGAG-ACGCCGUCCGGc -3' miRNA: 3'- ggaaaagGGU-CCUCuUGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 181056 | 0.68 | 0.903512 |
Target: 5'- gCUcgUCUC-GGAGAACGCgGgUCCGGg -3' miRNA: 3'- gGAaaAGGGuCCUCUUGCGgC-GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 112236 | 0.68 | 0.908896 |
Target: 5'- -----gUCCAGGGccgccgcGAACGCCGCCggCGGg -3' miRNA: 3'- ggaaaaGGGUCCU-------CUUGCGGCGG--GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 143849 | 0.68 | 0.909483 |
Target: 5'- gCCUccggCCAGGcGAuCGCCGCCgCGGc -3' miRNA: 3'- -GGAaaagGGUCCuCUuGCGGCGG-GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 12188 | 0.68 | 0.909483 |
Target: 5'- gCCg---CCgCGGccGGGCGCCGCUCGGa -3' miRNA: 3'- -GGaaaaGG-GUCcuCUUGCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 123761 | 0.68 | 0.909483 |
Target: 5'- gCCgcUUCCCGGGcguGGACGCC-UCCGu -3' miRNA: 3'- -GGaaAAGGGUCCu--CUUGCGGcGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 64792 | 0.68 | 0.909483 |
Target: 5'- gCCggUUCCgCGGcGAGcGACGCCGCggaCGGc -3' miRNA: 3'- -GGaaAAGG-GUC-CUC-UUGCGGCGg--GCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 132036 | 0.68 | 0.909483 |
Target: 5'- aCCUgagugUCUauaAGGAGAGCGaUCGCgCGGu -3' miRNA: 3'- -GGAaa---AGGg--UCCUCUUGC-GGCGgGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 42773 | 0.68 | 0.915232 |
Target: 5'- aCUgc-UCCAGGAGcGCGacuCCGUCCGGc -3' miRNA: 3'- gGAaaaGGGUCCUCuUGC---GGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 143735 | 0.68 | 0.915232 |
Target: 5'- uCCUcg-CCCGccGGAc-GCGCCGCCgGGg -3' miRNA: 3'- -GGAaaaGGGU--CCUcuUGCGGCGGgCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 62722 | 0.67 | 0.920758 |
Target: 5'- -----aCCCAGcGAGAcgcacuuccCGCCGCCCGcGg -3' miRNA: 3'- ggaaaaGGGUC-CUCUu--------GCGGCGGGC-C- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 112000 | 0.67 | 0.920758 |
Target: 5'- cCCUgcgcggUCaCCAGuc-GGCGCCGCCCGa -3' miRNA: 3'- -GGAaa----AG-GGUCcucUUGCGGCGGGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 24075 | 0.67 | 0.926061 |
Target: 5'- cCCgugcgCCCGGGcGGGCGUCGCCg-- -3' miRNA: 3'- -GGaaaa-GGGUCCuCUUGCGGCGGgcc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 65405 | 0.67 | 0.926061 |
Target: 5'- uCCg--UCCCucgcgcGGAGAcGCGCCuGCCCa- -3' miRNA: 3'- -GGaaaAGGGu-----CCUCU-UGCGG-CGGGcc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 126587 | 0.67 | 0.926061 |
Target: 5'- aUCUUa--CCGGGAcuGAGCGCCGaggCCGGc -3' miRNA: 3'- -GGAAaagGGUCCU--CUUGCGGCg--GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 190472 | 0.67 | 0.931139 |
Target: 5'- cCCgacgCCCAcGGGugccccACGCCGCCCaGGa -3' miRNA: 3'- -GGaaaaGGGUcCUCu-----UGCGGCGGG-CC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 191045 | 0.67 | 0.931139 |
Target: 5'- aCCagUUgCCCGGGgcgcccagacucAGAcacucgccCGCCGCCCGGu -3' miRNA: 3'- -GGaaAA-GGGUCC------------UCUu-------GCGGCGGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 13331 | 0.67 | 0.935992 |
Target: 5'- aCCgc-UCCCccggucGGGGGuggcGGCGCCccucGCCCGGg -3' miRNA: 3'- -GGaaaAGGG------UCCUC----UUGCGG----CGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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