miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 84059 0.67 0.945031
Target:  5'- gCCgccUCCCAgccGGAGAcgacgaccgccGCGCCGCCg-- -3'
miRNA:   3'- -GGaaaAGGGU---CCUCU-----------UGCGGCGGgcc -5'
11144 3' -55.8 NC_002794.1 + 55252 0.67 0.945031
Target:  5'- ------aCgAGGAGGACGCCGaagagCCGGg -3'
miRNA:   3'- ggaaaagGgUCCUCUUGCGGCg----GGCC- -5'
11144 3' -55.8 NC_002794.1 + 151975 0.67 0.945031
Target:  5'- uCCUcggCCCGGGAcGugGucuaCCGCCCGa -3'
miRNA:   3'- -GGAaaaGGGUCCUcUugC----GGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 30058 0.67 0.945031
Target:  5'- cCCggg-CCCGcGGGGuccgGUCGCCCGGu -3'
miRNA:   3'- -GGaaaaGGGU-CCUCuug-CGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 121025 0.67 0.9446
Target:  5'- ----cUCCCAagaggccGGAGAGCGgCGCgUCGGg -3'
miRNA:   3'- ggaaaAGGGU-------CCUCUUGCgGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 51271 0.67 0.940623
Target:  5'- ------gCCGGGAGGcagGCGCgGCCCGc -3'
miRNA:   3'- ggaaaagGGUCCUCU---UGCGgCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 3342 0.67 0.940623
Target:  5'- aCCggccUCCCacgGGGGGGugGCCGauuCUGGg -3'
miRNA:   3'- -GGaaa-AGGG---UCCUCUugCGGCg--GGCC- -5'
11144 3' -55.8 NC_002794.1 + 34314 0.67 0.940623
Target:  5'- uCCUcgaCCCGGGAGGcCGuCCGCaaGGc -3'
miRNA:   3'- -GGAaaaGGGUCCUCUuGC-GGCGggCC- -5'
11144 3' -55.8 NC_002794.1 + 14699 0.67 0.940623
Target:  5'- uCCUgacggCguGGGGAGCGCUGCUCGcGg -3'
miRNA:   3'- -GGAaaag-GguCCUCUUGCGGCGGGC-C- -5'
11144 3' -55.8 NC_002794.1 + 156569 0.67 0.940623
Target:  5'- gCCUg-UCUgAgagcGGAGAugGCCGaCCUGGg -3'
miRNA:   3'- -GGAaaAGGgU----CCUCUugCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 86771 0.67 0.940623
Target:  5'- ----aUCgCCGGGAacGAACcgGCCGCuCCGGa -3'
miRNA:   3'- ggaaaAG-GGUCCU--CUUG--CGGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 13331 0.67 0.935992
Target:  5'- aCCgc-UCCCccggucGGGGGuggcGGCGCCccucGCCCGGg -3'
miRNA:   3'- -GGaaaAGGG------UCCUC----UUGCGG----CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 58350 0.67 0.935992
Target:  5'- aCCUgccgCUCGGccuGGCGCCGCCCGa -3'
miRNA:   3'- -GGAaaa-GGGUCcucUUGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 191045 0.67 0.931139
Target:  5'- aCCagUUgCCCGGGgcgcccagacucAGAcacucgccCGCCGCCCGGu -3'
miRNA:   3'- -GGaaAA-GGGUCC------------UCUu-------GCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 190472 0.67 0.931139
Target:  5'- cCCgacgCCCAcGGGugccccACGCCGCCCaGGa -3'
miRNA:   3'- -GGaaaaGGGUcCUCu-----UGCGGCGGG-CC- -5'
11144 3' -55.8 NC_002794.1 + 126587 0.67 0.926061
Target:  5'- aUCUUa--CCGGGAcuGAGCGCCGaggCCGGc -3'
miRNA:   3'- -GGAAaagGGUCCU--CUUGCGGCg--GGCC- -5'
11144 3' -55.8 NC_002794.1 + 65405 0.67 0.926061
Target:  5'- uCCg--UCCCucgcgcGGAGAcGCGCCuGCCCa- -3'
miRNA:   3'- -GGaaaAGGGu-----CCUCU-UGCGG-CGGGcc -5'
11144 3' -55.8 NC_002794.1 + 24075 0.67 0.926061
Target:  5'- cCCgugcgCCCGGGcGGGCGUCGCCg-- -3'
miRNA:   3'- -GGaaaa-GGGUCCuCUUGCGGCGGgcc -5'
11144 3' -55.8 NC_002794.1 + 112000 0.67 0.920758
Target:  5'- cCCUgcgcggUCaCCAGuc-GGCGCCGCCCGa -3'
miRNA:   3'- -GGAaa----AG-GGUCcucUUGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 62722 0.67 0.920758
Target:  5'- -----aCCCAGcGAGAcgcacuuccCGCCGCCCGcGg -3'
miRNA:   3'- ggaaaaGGGUC-CUCUu--------GCGGCGGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.