miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 143735 0.68 0.915232
Target:  5'- uCCUcg-CCCGccGGAc-GCGCCGCCgGGg -3'
miRNA:   3'- -GGAaaaGGGU--CCUcuUGCGGCGGgCC- -5'
11144 3' -55.8 NC_002794.1 + 42773 0.68 0.915232
Target:  5'- aCUgc-UCCAGGAGcGCGacuCCGUCCGGc -3'
miRNA:   3'- gGAaaaGGGUCCUCuUGC---GGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 132036 0.68 0.909483
Target:  5'- aCCUgagugUCUauaAGGAGAGCGaUCGCgCGGu -3'
miRNA:   3'- -GGAaa---AGGg--UCCUCUUGC-GGCGgGCC- -5'
11144 3' -55.8 NC_002794.1 + 12188 0.68 0.909483
Target:  5'- gCCg---CCgCGGccGGGCGCCGCUCGGa -3'
miRNA:   3'- -GGaaaaGG-GUCcuCUUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 64792 0.68 0.909483
Target:  5'- gCCggUUCCgCGGcGAGcGACGCCGCggaCGGc -3'
miRNA:   3'- -GGaaAAGG-GUC-CUC-UUGCGGCGg--GCC- -5'
11144 3' -55.8 NC_002794.1 + 123761 0.68 0.909483
Target:  5'- gCCgcUUCCCGGGcguGGACGCC-UCCGu -3'
miRNA:   3'- -GGaaAAGGGUCCu--CUUGCGGcGGGCc -5'
11144 3' -55.8 NC_002794.1 + 143849 0.68 0.909483
Target:  5'- gCCUccggCCAGGcGAuCGCCGCCgCGGc -3'
miRNA:   3'- -GGAaaagGGUCCuCUuGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 112236 0.68 0.908896
Target:  5'- -----gUCCAGGGccgccgcGAACGCCGCCggCGGg -3'
miRNA:   3'- ggaaaaGGGUCCU-------CUUGCGGCGG--GCC- -5'
11144 3' -55.8 NC_002794.1 + 181056 0.68 0.903512
Target:  5'- gCUcgUCUC-GGAGAACGCgGgUCCGGg -3'
miRNA:   3'- gGAaaAGGGuCCUCUUGCGgC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 76950 0.68 0.897323
Target:  5'- ------aCCGcGGAG-ACGCCGUCCGGc -3'
miRNA:   3'- ggaaaagGGU-CCUCuUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 124159 0.68 0.897323
Target:  5'- uCCgcggggCCCGGGAGAGCGUCGgggaggggaCUGGu -3'
miRNA:   3'- -GGaaaa--GGGUCCUCUUGCGGCg--------GGCC- -5'
11144 3' -55.8 NC_002794.1 + 189297 0.68 0.897323
Target:  5'- -----gCCCAGGAGGugGUCGUgcaguUCGGg -3'
miRNA:   3'- ggaaaaGGGUCCUCUugCGGCG-----GGCC- -5'
11144 3' -55.8 NC_002794.1 + 8162 0.68 0.890916
Target:  5'- uCCUUcUCCCccGGGcccGGCGucCCGCCCGGu -3'
miRNA:   3'- -GGAAaAGGGucCUC---UUGC--GGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 154312 0.68 0.890916
Target:  5'- gCCUc--CUCGGGAGAGCGgCGucggucguCCCGGg -3'
miRNA:   3'- -GGAaaaGGGUCCUCUUGCgGC--------GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 119816 0.68 0.890916
Target:  5'- gCguggCUCAGGAGAuaguACGCCGUauaCCGGu -3'
miRNA:   3'- gGaaaaGGGUCCUCU----UGCGGCG---GGCC- -5'
11144 3' -55.8 NC_002794.1 + 57531 0.69 0.870432
Target:  5'- ----cUCagcaAGGAGAACGCCGUCaCGGc -3'
miRNA:   3'- ggaaaAGgg--UCCUCUUGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 131625 0.69 0.863196
Target:  5'- aCCUc-UCCCGGGAGcguCGUcgCGCCCGu -3'
miRNA:   3'- -GGAaaAGGGUCCUCuu-GCG--GCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 101014 0.69 0.848144
Target:  5'- gCCU--UCCUgucGGGGGACGCgGgCCGGg -3'
miRNA:   3'- -GGAaaAGGGu--CCUCUUGCGgCgGGCC- -5'
11144 3' -55.8 NC_002794.1 + 194373 0.7 0.835571
Target:  5'- cCCgcgugCCCAGccacaccagcuGCGCCGCCCGGu -3'
miRNA:   3'- -GGaaaa-GGGUCcucu-------UGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 127064 0.7 0.815886
Target:  5'- gCUaugUCUguGGAGAGCGCC-CgCCGGa -3'
miRNA:   3'- gGAaa-AGGguCCUCUUGCGGcG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.