miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 63575 0.66 0.949219
Target:  5'- aCCUUccgccCCCGGGAGGugaaGCuccuCCGCaCCGGa -3'
miRNA:   3'- -GGAAaa---GGGUCCUCU----UGc---GGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 64598 0.66 0.949219
Target:  5'- aCUUcUUCCC-GGAGGACGUcuuCGuCCCGa -3'
miRNA:   3'- gGAA-AAGGGuCCUCUUGCG---GC-GGGCc -5'
11144 3' -55.8 NC_002794.1 + 64792 0.68 0.909483
Target:  5'- gCCggUUCCgCGGcGAGcGACGCCGCggaCGGc -3'
miRNA:   3'- -GGaaAAGG-GUC-CUC-UUGCGGCGg--GCC- -5'
11144 3' -55.8 NC_002794.1 + 65405 0.67 0.926061
Target:  5'- uCCg--UCCCucgcgcGGAGAcGCGCCuGCCCa- -3'
miRNA:   3'- -GGaaaAGGGu-----CCUCU-UGCGG-CGGGcc -5'
11144 3' -55.8 NC_002794.1 + 66686 0.66 0.949219
Target:  5'- cCCggcgcCCCAGGcaaAGcguACGCCgcGCCCGGc -3'
miRNA:   3'- -GGaaaa-GGGUCC---UCu--UGCGG--CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 67548 0.66 0.963828
Target:  5'- cCCUccgCCCGGGcc-GCGCCGCaCCa- -3'
miRNA:   3'- -GGAaaaGGGUCCucuUGCGGCG-GGcc -5'
11144 3' -55.8 NC_002794.1 + 69782 0.66 0.956945
Target:  5'- cCCgacgagCCAcGAGAGCGCCGCCgCGu -3'
miRNA:   3'- -GGaaaag-GGUcCUCUUGCGGCGG-GCc -5'
11144 3' -55.8 NC_002794.1 + 70732 0.75 0.577958
Target:  5'- uCCgcca-CCAGGAGcAGCGCgaGCCCGGg -3'
miRNA:   3'- -GGaaaagGGUCCUC-UUGCGg-CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 76950 0.68 0.897323
Target:  5'- ------aCCGcGGAG-ACGCCGUCCGGc -3'
miRNA:   3'- ggaaaagGGU-CCUCuUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 81402 0.73 0.647167
Target:  5'- uCCgg-UCCCGGcucGGGAGCuGCuCGCCCGGc -3'
miRNA:   3'- -GGaaaAGGGUC---CUCUUG-CG-GCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 84059 0.67 0.945031
Target:  5'- gCCgccUCCCAgccGGAGAcgacgaccgccGCGCCGCCg-- -3'
miRNA:   3'- -GGaaaAGGGU---CCUCU-----------UGCGGCGGgcc -5'
11144 3' -55.8 NC_002794.1 + 86771 0.67 0.940623
Target:  5'- ----aUCgCCGGGAacGAACcgGCCGCuCCGGa -3'
miRNA:   3'- ggaaaAG-GGUCCU--CUUG--CGGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 86892 0.75 0.577958
Target:  5'- cCCga-UCCCGGcGGGGcCGCCGaCCCGGu -3'
miRNA:   3'- -GGaaaAGGGUC-CUCUuGCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 93081 0.66 0.963503
Target:  5'- gCCUgUUCCCGGGcu-GCGgccucucCUGCCUGGa -3'
miRNA:   3'- -GGAaAAGGGUCCucuUGC-------GGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 101014 0.69 0.848144
Target:  5'- gCCU--UCCUgucGGGGGACGCgGgCCGGg -3'
miRNA:   3'- -GGAaaAGGGu--CCUCUUGCGgCgGGCC- -5'
11144 3' -55.8 NC_002794.1 + 101200 0.72 0.715794
Target:  5'- ----cUCCUggAGGAGGcgGCCGCCCGGc -3'
miRNA:   3'- ggaaaAGGG--UCCUCUugCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 104423 0.66 0.96049
Target:  5'- gCCUcggCCgCcGGcccGGACGCCGCCgCGGg -3'
miRNA:   3'- -GGAaaaGG-GuCCu--CUUGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 107255 0.71 0.762963
Target:  5'- aCCUgg-CCCGGcGGAgccGCGCCGUCCGc -3'
miRNA:   3'- -GGAaaaGGGUCcUCU---UGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 107306 0.66 0.956945
Target:  5'- ----cUCCUcGcGGGGGCGCCGUCCGc -3'
miRNA:   3'- ggaaaAGGGuC-CUCUUGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 111610 0.66 0.949219
Target:  5'- ----cUCCCAGGccGGcGGgGCCGCCgCGGc -3'
miRNA:   3'- ggaaaAGGGUCC--UC-UUgCGGCGG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.