miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 112000 0.67 0.920758
Target:  5'- cCCUgcgcggUCaCCAGuc-GGCGCCGCCCGa -3'
miRNA:   3'- -GGAaa----AG-GGUCcucUUGCGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 112236 0.68 0.908896
Target:  5'- -----gUCCAGGGccgccgcGAACGCCGCCggCGGg -3'
miRNA:   3'- ggaaaaGGGUCCU-------CUUGCGGCGG--GCC- -5'
11144 3' -55.8 NC_002794.1 + 112323 0.66 0.96049
Target:  5'- gCCgacggCgGGGAGcGCGCCGgCCGGc -3'
miRNA:   3'- -GGaaaagGgUCCUCuUGCGGCgGGCC- -5'
11144 3' -55.8 NC_002794.1 + 113222 0.71 0.762963
Target:  5'- uCCUccgCCCGGGcGAcCGCCGUCCaGGa -3'
miRNA:   3'- -GGAaaaGGGUCCuCUuGCGGCGGG-CC- -5'
11144 3' -55.8 NC_002794.1 + 116618 0.66 0.96049
Target:  5'- cUCgucgCCCAGGcgguAGAGCggcaggggcccgGCCGUCCGGc -3'
miRNA:   3'- -GGaaaaGGGUCC----UCUUG------------CGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 119816 0.68 0.890916
Target:  5'- gCguggCUCAGGAGAuaguACGCCGUauaCCGGu -3'
miRNA:   3'- gGaaaaGGGUCCUCU----UGCGGCG---GGCC- -5'
11144 3' -55.8 NC_002794.1 + 121025 0.67 0.9446
Target:  5'- ----cUCCCAagaggccGGAGAGCGgCGCgUCGGg -3'
miRNA:   3'- ggaaaAGGGU-------CCUCUUGCgGCG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 121634 0.73 0.657066
Target:  5'- aCgagUCuCCGGGAGAACGCCGUcgCCGu -3'
miRNA:   3'- gGaaaAG-GGUCCUCUUGCGGCG--GGCc -5'
11144 3' -55.8 NC_002794.1 + 123761 0.68 0.909483
Target:  5'- gCCgcUUCCCGGGcguGGACGCC-UCCGu -3'
miRNA:   3'- -GGaaAAGGGUCCu--CUUGCGGcGGGCc -5'
11144 3' -55.8 NC_002794.1 + 124159 0.68 0.897323
Target:  5'- uCCgcggggCCCGGGAGAGCGUCGgggaggggaCUGGu -3'
miRNA:   3'- -GGaaaa--GGGUCCUCUUGCGGCg--------GGCC- -5'
11144 3' -55.8 NC_002794.1 + 126587 0.67 0.926061
Target:  5'- aUCUUa--CCGGGAcuGAGCGCCGaggCCGGc -3'
miRNA:   3'- -GGAAaagGGUCCU--CUUGCGGCg--GGCC- -5'
11144 3' -55.8 NC_002794.1 + 127064 0.7 0.815886
Target:  5'- gCUaugUCUguGGAGAGCGCC-CgCCGGa -3'
miRNA:   3'- gGAaa-AGGguCCUCUUGCGGcG-GGCC- -5'
11144 3' -55.8 NC_002794.1 + 131625 0.69 0.863196
Target:  5'- aCCUc-UCCCGGGAGcguCGUcgCGCCCGu -3'
miRNA:   3'- -GGAaaAGGGUCCUCuu-GCG--GCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 132036 0.68 0.909483
Target:  5'- aCCUgagugUCUauaAGGAGAGCGaUCGCgCGGu -3'
miRNA:   3'- -GGAaa---AGGg--UCCUCUUGC-GGCGgGCC- -5'
11144 3' -55.8 NC_002794.1 + 132884 0.66 0.956945
Target:  5'- aCCggaaUCCC------GCGCCGCCCGGa -3'
miRNA:   3'- -GGaaa-AGGGuccucuUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 141442 0.66 0.949219
Target:  5'- gCCgggggCgCCGGGAGcGGCGCggCGUCCGGa -3'
miRNA:   3'- -GGaaaa-G-GGUCCUC-UUGCG--GCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 143735 0.68 0.915232
Target:  5'- uCCUcg-CCCGccGGAc-GCGCCGCCgGGg -3'
miRNA:   3'- -GGAaaaGGGU--CCUcuUGCGGCGGgCC- -5'
11144 3' -55.8 NC_002794.1 + 143849 0.68 0.909483
Target:  5'- gCCUccggCCAGGcGAuCGCCGCCgCGGc -3'
miRNA:   3'- -GGAaaagGGUCCuCUuGCGGCGG-GCC- -5'
11144 3' -55.8 NC_002794.1 + 151975 0.67 0.945031
Target:  5'- uCCUcggCCCGGGAcGugGucuaCCGCCCGa -3'
miRNA:   3'- -GGAaaaGGGUCCUcUugC----GGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 152089 0.66 0.956945
Target:  5'- cUCUUgcCCUGGGAuacCGCCGUCUGGg -3'
miRNA:   3'- -GGAAaaGGGUCCUcuuGCGGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.