miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 153265 0.74 0.637256
Target:  5'- aCCUgg-CCCAGGucuACGCCGaCCCGu -3'
miRNA:   3'- -GGAaaaGGGUCCucuUGCGGC-GGGCc -5'
11144 3' -55.8 NC_002794.1 + 153783 0.66 0.949219
Target:  5'- aCCgcUUUCCCcgauccggaugAGGAcGAGaGCCGgCCCGGa -3'
miRNA:   3'- -GGa-AAAGGG-----------UCCU-CUUgCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 154312 0.68 0.890916
Target:  5'- gCCUc--CUCGGGAGAGCGgCGucggucguCCCGGg -3'
miRNA:   3'- -GGAaaaGGGUCCUCUUGCgGC--------GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 156569 0.67 0.940623
Target:  5'- gCCUg-UCUgAgagcGGAGAugGCCGaCCUGGg -3'
miRNA:   3'- -GGAaaAGGgU----CCUCUugCGGC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 169659 0.67 0.945031
Target:  5'- aCCg--UUCCAGGAGAACGUUuauauaaaCUCGGg -3'
miRNA:   3'- -GGaaaAGGGUCCUCUUGCGGc-------GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 181056 0.68 0.903512
Target:  5'- gCUcgUCUC-GGAGAACGCgGgUCCGGg -3'
miRNA:   3'- gGAaaAGGGuCCUCUUGCGgC-GGGCC- -5'
11144 3' -55.8 NC_002794.1 + 183730 0.66 0.949219
Target:  5'- cCCgcacgcgCCCAGcAGGAUcagGCCGCCCGc -3'
miRNA:   3'- -GGaaaa---GGGUCcUCUUG---CGGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 186203 0.72 0.715794
Target:  5'- aCCgcgggcCCCAGGgcAGAugGCgGUCCGGg -3'
miRNA:   3'- -GGaaaa--GGGUCC--UCUugCGgCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 189297 0.68 0.897323
Target:  5'- -----gCCCAGGAGGugGUCGUgcaguUCGGg -3'
miRNA:   3'- ggaaaaGGGUCCUCUugCGGCG-----GGCC- -5'
11144 3' -55.8 NC_002794.1 + 190472 0.67 0.931139
Target:  5'- cCCgacgCCCAcGGGugccccACGCCGCCCaGGa -3'
miRNA:   3'- -GGaaaaGGGUcCUCu-----UGCGGCGGG-CC- -5'
11144 3' -55.8 NC_002794.1 + 191045 0.67 0.931139
Target:  5'- aCCagUUgCCCGGGgcgcccagacucAGAcacucgccCGCCGCCCGGu -3'
miRNA:   3'- -GGaaAA-GGGUCC------------UCUu-------GCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 194373 0.7 0.835571
Target:  5'- cCCgcgugCCCAGccacaccagcuGCGCCGCCCGGu -3'
miRNA:   3'- -GGaaaa-GGGUCcucu-------UGCGGCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.