miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11144 3' -55.8 NC_002794.1 + 24075 0.67 0.926061
Target:  5'- cCCgugcgCCCGGGcGGGCGUCGCCg-- -3'
miRNA:   3'- -GGaaaa-GGGUCCuCUUGCGGCGGgcc -5'
11144 3' -55.8 NC_002794.1 + 19484 0.71 0.752783
Target:  5'- gCCggucgCCCGcaccgacgacggcGGAGGucGCGCCGCUCGGa -3'
miRNA:   3'- -GGaaaa-GGGU-------------CCUCU--UGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 16716 0.67 0.945031
Target:  5'- gCCg--UCCgAGGAGucuGCGCCgGCuCCGu -3'
miRNA:   3'- -GGaaaAGGgUCCUCu--UGCGG-CG-GGCc -5'
11144 3' -55.8 NC_002794.1 + 15185 0.72 0.734922
Target:  5'- gCCggagaCCGGGuGAACGaCCGCCCGc -3'
miRNA:   3'- -GGaaaagGGUCCuCUUGC-GGCGGGCc -5'
11144 3' -55.8 NC_002794.1 + 14699 0.67 0.940623
Target:  5'- uCCUgacggCguGGGGAGCGCUGCUCGcGg -3'
miRNA:   3'- -GGAaaag-GguCCUCUUGCGGCGGGC-C- -5'
11144 3' -55.8 NC_002794.1 + 13869 0.67 0.945031
Target:  5'- gCCgcgaCCCGGuucuccGAGCGCCGCCCu- -3'
miRNA:   3'- -GGaaaaGGGUCcu----CUUGCGGCGGGcc -5'
11144 3' -55.8 NC_002794.1 + 13331 0.67 0.935992
Target:  5'- aCCgc-UCCCccggucGGGGGuggcGGCGCCccucGCCCGGg -3'
miRNA:   3'- -GGaaaAGGG------UCCUC----UUGCGG----CGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 12188 0.68 0.909483
Target:  5'- gCCg---CCgCGGccGGGCGCCGCUCGGa -3'
miRNA:   3'- -GGaaaaGG-GUCcuCUUGCGGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 8162 0.68 0.890916
Target:  5'- uCCUUcUCCCccGGGcccGGCGucCCGCCCGGu -3'
miRNA:   3'- -GGAAaAGGGucCUC---UUGC--GGCGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 8031 0.73 0.666947
Target:  5'- cUCUUgugUCCCgAGGAaGACGCCGCaCCGu -3'
miRNA:   3'- -GGAAa--AGGG-UCCUcUUGCGGCG-GGCc -5'
11144 3' -55.8 NC_002794.1 + 4125 0.66 0.96049
Target:  5'- cCCguucgUUCCCGGGGucuugcGAGC-CC-CCCGGa -3'
miRNA:   3'- -GGaa---AAGGGUCCU------CUUGcGGcGGGCC- -5'
11144 3' -55.8 NC_002794.1 + 3342 0.67 0.940623
Target:  5'- aCCggccUCCCacgGGGGGGugGCCGauuCUGGg -3'
miRNA:   3'- -GGaaa-AGGG---UCCUCUugCGGCg--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.