Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11144 | 3' | -55.8 | NC_002794.1 | + | 3342 | 0.67 | 0.940623 |
Target: 5'- aCCggccUCCCacgGGGGGGugGCCGauuCUGGg -3' miRNA: 3'- -GGaaa-AGGG---UCCUCUugCGGCg--GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 34314 | 0.67 | 0.940623 |
Target: 5'- uCCUcgaCCCGGGAGGcCGuCCGCaaGGc -3' miRNA: 3'- -GGAaaaGGGUCCUCUuGC-GGCGggCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 14699 | 0.67 | 0.940623 |
Target: 5'- uCCUgacggCguGGGGAGCGCUGCUCGcGg -3' miRNA: 3'- -GGAaaag-GguCCUCUUGCGGCGGGC-C- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 156569 | 0.67 | 0.940623 |
Target: 5'- gCCUg-UCUgAgagcGGAGAugGCCGaCCUGGg -3' miRNA: 3'- -GGAaaAGGgU----CCUCUugCGGC-GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 86771 | 0.67 | 0.940623 |
Target: 5'- ----aUCgCCGGGAacGAACcgGCCGCuCCGGa -3' miRNA: 3'- ggaaaAG-GGUCCU--CUUG--CGGCG-GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 169659 | 0.67 | 0.945031 |
Target: 5'- aCCg--UUCCAGGAGAACGUUuauauaaaCUCGGg -3' miRNA: 3'- -GGaaaAGGGUCCUCUUGCGGc-------GGGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 121025 | 0.67 | 0.9446 |
Target: 5'- ----cUCCCAagaggccGGAGAGCGgCGCgUCGGg -3' miRNA: 3'- ggaaaAGGGU-------CCUCUUGCgGCG-GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 13869 | 0.67 | 0.945031 |
Target: 5'- gCCgcgaCCCGGuucuccGAGCGCCGCCCu- -3' miRNA: 3'- -GGaaaaGGGUCcu----CUUGCGGCGGGcc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 16716 | 0.67 | 0.945031 |
Target: 5'- gCCg--UCCgAGGAGucuGCGCCgGCuCCGu -3' miRNA: 3'- -GGaaaAGGgUCCUCu--UGCGG-CG-GGCc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 84059 | 0.67 | 0.945031 |
Target: 5'- gCCgccUCCCAgccGGAGAcgacgaccgccGCGCCGCCg-- -3' miRNA: 3'- -GGaaaAGGGU---CCUCU-----------UGCGGCGGgcc -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 55252 | 0.67 | 0.945031 |
Target: 5'- ------aCgAGGAGGACGCCGaagagCCGGg -3' miRNA: 3'- ggaaaagGgUCCUCUUGCGGCg----GGCC- -5' |
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11144 | 3' | -55.8 | NC_002794.1 | + | 67548 | 0.66 | 0.963828 |
Target: 5'- cCCUccgCCCGGGcc-GCGCCGCaCCa- -3' miRNA: 3'- -GGAaaaGGGUCCucuUGCGGCG-GGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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