miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11145 3' -61.3 NC_002794.1 + 78993 0.66 0.783279
Target:  5'- cCGCUCCCGGAgucgcggcgacuccaUCCCGcccucGGCCGc -3'
miRNA:   3'- uGCGGGGGCCU---------------GGGGCauauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 99615 0.66 0.779789
Target:  5'- cGCGCCgCCUcGGCCCCGUuucugcagaucGUGccccgGGGCUGu -3'
miRNA:   3'- -UGCGG-GGGcCUGGGGCA-----------UAU-----UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 16535 0.66 0.779789
Target:  5'- cCGUCCCCGGcguCCCCGgcguc-GCCa -3'
miRNA:   3'- uGCGGGGGCCu--GGGGCauauucCGGc -5'
11145 3' -61.3 NC_002794.1 + 126 0.66 0.779789
Target:  5'- aACGCCgaCCGGAgCCCGgg-AccGCCGc -3'
miRNA:   3'- -UGCGGg-GGCCUgGGGCauaUucCGGC- -5'
11145 3' -61.3 NC_002794.1 + 99803 0.66 0.778037
Target:  5'- cGCGCgCCgCGGGCgCCGgcgccgucGGCCGa -3'
miRNA:   3'- -UGCGgGG-GCCUGgGGCauauu---CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 128453 0.66 0.778037
Target:  5'- gGCGCCUCCGGAgCCcaggacgaccggucaCCGggucgcggaccgGGGGCCGu -3'
miRNA:   3'- -UGCGGGGGCCU-GG---------------GGCaua---------UUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 187761 0.66 0.77716
Target:  5'- aACGCCgCCGGcgccggucgccucgACCCCGgaggAAcGGCCc -3'
miRNA:   3'- -UGCGGgGGCC--------------UGGGGCaua-UU-CCGGc -5'
11145 3' -61.3 NC_002794.1 + 72703 0.66 0.770983
Target:  5'- -gGuCCCCCGGGCCgaccaCCGUgcccAUGAcGGCCc -3'
miRNA:   3'- ugC-GGGGGCCUGG-----GGCA----UAUU-CCGGc -5'
11145 3' -61.3 NC_002794.1 + 153657 0.66 0.770983
Target:  5'- uACGCCgcgUCCGG-CCgCCGguUGUGAGGCuCGa -3'
miRNA:   3'- -UGCGG---GGGCCuGG-GGC--AUAUUCCG-GC- -5'
11145 3' -61.3 NC_002794.1 + 143738 0.66 0.770983
Target:  5'- uCGCCCgCCGGACgCgCCGccggGGGGCUc -3'
miRNA:   3'- uGCGGG-GGCCUG-G-GGCaua-UUCCGGc -5'
11145 3' -61.3 NC_002794.1 + 41947 0.66 0.770097
Target:  5'- cACGCCCUCGGcgugcgcGgCCUGg--AAGGUCGg -3'
miRNA:   3'- -UGCGGGGGCC-------UgGGGCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 17436 0.66 0.770097
Target:  5'- cGCGCCgccggcgCUCGGGCCCgCGaccGAGGUCGa -3'
miRNA:   3'- -UGCGG-------GGGCCUGGG-GCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 61137 0.66 0.762067
Target:  5'- cGCGCCCCUGcugccgcccGACCCCGagcgcgcGGuCCGg -3'
miRNA:   3'- -UGCGGGGGC---------CUGGGGCauauu--CC-GGC- -5'
11145 3' -61.3 NC_002794.1 + 128020 0.66 0.762067
Target:  5'- cCGCCCCguCGGcugacACCCCGc---GGGCCa -3'
miRNA:   3'- uGCGGGG--GCC-----UGGGGCauauUCCGGc -5'
11145 3' -61.3 NC_002794.1 + 145991 0.66 0.762067
Target:  5'- aGCGCCCagaaCGG-CCgCCG----GGGCCGg -3'
miRNA:   3'- -UGCGGGg---GCCuGG-GGCauauUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 68850 0.66 0.762067
Target:  5'- -gGUCCCCGacGACCCCGgagcucGGGCUc -3'
miRNA:   3'- ugCGGGGGC--CUGGGGCauau--UCCGGc -5'
11145 3' -61.3 NC_002794.1 + 14180 0.66 0.753048
Target:  5'- uGCGCCUCCGaGACgucagcguCCCGgcccgcuGGCCGc -3'
miRNA:   3'- -UGCGGGGGC-CUG--------GGGCauauu--CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 84748 0.66 0.753048
Target:  5'- aACGCCacgaCCGG-CCgCGag-AGGGCCGu -3'
miRNA:   3'- -UGCGGg---GGCCuGGgGCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 38573 0.66 0.752141
Target:  5'- gGCGCCUCgaCGGAgucggccgccuccUCCCGgacgaGAGGCCGg -3'
miRNA:   3'- -UGCGGGG--GCCU-------------GGGGCaua--UUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 150387 0.66 0.743935
Target:  5'- uACGCUCCCGGgcGCCCUGguugcGGCa- -3'
miRNA:   3'- -UGCGGGGGCC--UGGGGCauauuCCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.