miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11145 3' -61.3 NC_002794.1 + 35808 0.88 0.040628
Target:  5'- uGCGCCCCCGGACCCgGUuuccGGGCCGc -3'
miRNA:   3'- -UGCGGGGGCCUGGGgCAuau-UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 66941 0.77 0.214038
Target:  5'- cCGCCCCCGaGGCCCUc---GAGGCCGg -3'
miRNA:   3'- uGCGGGGGC-CUGGGGcauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 64291 0.77 0.221094
Target:  5'- uACGCCCaCCGcGGCCCCGUcGUGcuccgccaccaccccGGGCCGu -3'
miRNA:   3'- -UGCGGG-GGC-CUGGGGCA-UAU---------------UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 119679 0.76 0.229399
Target:  5'- gGCGUCCCCGGcguCUCCGgcUGcuGGGCCGg -3'
miRNA:   3'- -UGCGGGGGCCu--GGGGCauAU--UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 183624 0.76 0.251316
Target:  5'- gGCGCCCCCGcGcCCCCGacucgagcAGGGCCGc -3'
miRNA:   3'- -UGCGGGGGC-CuGGGGCaua-----UUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 150584 0.74 0.334474
Target:  5'- cUGCCCUCGGGCgCCCGag-GAcGGCCGg -3'
miRNA:   3'- uGCGGGGGCCUG-GGGCauaUU-CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 132894 0.74 0.334474
Target:  5'- cGCGCCgCCCGGACCUgCGgc---GGCCGg -3'
miRNA:   3'- -UGCGG-GGGCCUGGG-GCauauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 186028 0.73 0.348924
Target:  5'- -gGCCcggaCCCGGGCCCCGgcu--GGCCGu -3'
miRNA:   3'- ugCGG----GGGCCUGGGGCauauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 90955 0.73 0.374496
Target:  5'- uGCGCCgaggCCCGGGCCCgcuucggcguggccuCGUAccGGGCCGa -3'
miRNA:   3'- -UGCGG----GGGCCUGGG---------------GCAUauUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 59180 0.72 0.419293
Target:  5'- -aGCUgCUGGACCCCGUGgc-GGUCGa -3'
miRNA:   3'- ugCGGgGGCCUGGGGCAUauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 179419 0.72 0.427629
Target:  5'- aACcCUCCCGGGCCCCGggcgcgGAGGCg- -3'
miRNA:   3'- -UGcGGGGGCCUGGGGCaua---UUCCGgc -5'
11145 3' -61.3 NC_002794.1 + 55071 0.72 0.436062
Target:  5'- uCGCCCCCGGuCCCCGcca---GCCGc -3'
miRNA:   3'- uGCGGGGGCCuGGGGCauauucCGGC- -5'
11145 3' -61.3 NC_002794.1 + 182007 0.71 0.44459
Target:  5'- gACGaaagCCCgGGACCCCGgcguccGGGCCGc -3'
miRNA:   3'- -UGCg---GGGgCCUGGGGCauau--UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 64388 0.71 0.45321
Target:  5'- uGCGCCUCC--GCCCCGgccagAGGGCCa -3'
miRNA:   3'- -UGCGGGGGccUGGGGCaua--UUCCGGc -5'
11145 3' -61.3 NC_002794.1 + 65759 0.71 0.461922
Target:  5'- cGCGCCgCCGccgCCCGUgGUGGGGCCGa -3'
miRNA:   3'- -UGCGGgGGCcugGGGCA-UAUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 58042 0.71 0.47072
Target:  5'- cGCGCCgCCCGu-CCCCGUcgGcGGCCc -3'
miRNA:   3'- -UGCGG-GGGCcuGGGGCAuaUuCCGGc -5'
11145 3' -61.3 NC_002794.1 + 150516 0.71 0.479603
Target:  5'- cCuCCCCCuccucGGCCCCGUAgccGGGCCGg -3'
miRNA:   3'- uGcGGGGGc----CUGGGGCAUau-UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 86 0.71 0.488567
Target:  5'- aACGCCCCCGaGGCacaCCGaacgccGGCCGa -3'
miRNA:   3'- -UGCGGGGGC-CUGg--GGCauauu-CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 184485 0.7 0.506725
Target:  5'- cGCGCggggCCCCGGACgCCCGggcggcgcGGGCCc -3'
miRNA:   3'- -UGCG----GGGGCCUG-GGGCauau----UCCGGc -5'
11145 3' -61.3 NC_002794.1 + 76510 0.7 0.515911
Target:  5'- cCGgCCCC-GACCCCGUcccAGGCCa -3'
miRNA:   3'- uGCgGGGGcCUGGGGCAuauUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.