miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11145 3' -61.3 NC_002794.1 + 86 0.71 0.488567
Target:  5'- aACGCCCCCGaGGCacaCCGaacgccGGCCGa -3'
miRNA:   3'- -UGCGGGGGC-CUGg--GGCauauu-CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 126 0.66 0.779789
Target:  5'- aACGCCgaCCGGAgCCCGgg-AccGCCGc -3'
miRNA:   3'- -UGCGGg-GGCCUgGGGCauaUucCGGC- -5'
11145 3' -61.3 NC_002794.1 + 14180 0.66 0.753048
Target:  5'- uGCGCCUCCGaGACgucagcguCCCGgcccgcuGGCCGc -3'
miRNA:   3'- -UGCGGGGGC-CUG--------GGGCauauu--CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 16358 0.7 0.543853
Target:  5'- gGCGCCaCCCGcACCCgCGUGcacggcGGCCGg -3'
miRNA:   3'- -UGCGG-GGGCcUGGG-GCAUauu---CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 16535 0.66 0.779789
Target:  5'- cCGUCCCCGGcguCCCCGgcguc-GCCa -3'
miRNA:   3'- uGCGGGGGCCu--GGGGCauauucCGGc -5'
11145 3' -61.3 NC_002794.1 + 17436 0.66 0.770097
Target:  5'- cGCGCCgccggcgCUCGGGCCCgCGaccGAGGUCGa -3'
miRNA:   3'- -UGCGG-------GGGCCUGGG-GCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 17674 0.68 0.668537
Target:  5'- cCGCCgCCGG-CCCCGgcgGAGaCCGa -3'
miRNA:   3'- uGCGGgGGCCuGGGGCauaUUCcGGC- -5'
11145 3' -61.3 NC_002794.1 + 23003 0.66 0.731957
Target:  5'- aACGCCgCCGGucuucgugagguccGuCCCCGgcccGAGGCCa -3'
miRNA:   3'- -UGCGGgGGCC--------------U-GGGGCaua-UUCCGGc -5'
11145 3' -61.3 NC_002794.1 + 23109 0.67 0.716102
Target:  5'- gGCGUCCCCGuuGGCCUgCGUGUGAGuCCc -3'
miRNA:   3'- -UGCGGGGGC--CUGGG-GCAUAUUCcGGc -5'
11145 3' -61.3 NC_002794.1 + 30718 0.67 0.714223
Target:  5'- uACGCCaucaUCGGACUCCGcccgaacuGGCCGc -3'
miRNA:   3'- -UGCGGg---GGCCUGGGGCauauu---CCGGC- -5'
11145 3' -61.3 NC_002794.1 + 35808 0.88 0.040628
Target:  5'- uGCGCCCCCGGACCCgGUuuccGGGCCGc -3'
miRNA:   3'- -UGCGGGGGCCUGGGgCAuau-UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 38573 0.66 0.752141
Target:  5'- gGCGCCUCgaCGGAgucggccgccuccUCCCGgacgaGAGGCCGg -3'
miRNA:   3'- -UGCGGGG--GCCU-------------GGGGCaua--UUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 41856 0.68 0.649275
Target:  5'- -aGCCCCa-GGCCgCCGggcAGGGCCGg -3'
miRNA:   3'- ugCGGGGgcCUGG-GGCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 41947 0.66 0.770097
Target:  5'- cACGCCCUCGGcgugcgcGgCCUGg--AAGGUCGg -3'
miRNA:   3'- -UGCGGGGGCC-------UgGGGCauaUUCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 47738 0.68 0.658915
Target:  5'- -aGCCCgCCGGGUCCaCGUGgc-GGCCGu -3'
miRNA:   3'- ugCGGG-GGCCUGGG-GCAUauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 51360 0.66 0.743935
Target:  5'- cCGCCCgaggCGGccGCCCCGUcc--GGCCGg -3'
miRNA:   3'- uGCGGGg---GCC--UGGGGCAuauuCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 51927 0.69 0.588533
Target:  5'- uACGUCuaCCUGGACCCCGcGUucacguccaacaagAAGGCCu -3'
miRNA:   3'- -UGCGG--GGGCCUGGGGCaUA--------------UUCCGGc -5'
11145 3' -61.3 NC_002794.1 + 55071 0.72 0.436062
Target:  5'- uCGCCCCCGGuCCCCGcca---GCCGc -3'
miRNA:   3'- uGCGGGGGCCuGGGGCauauucCGGC- -5'
11145 3' -61.3 NC_002794.1 + 56169 0.7 0.534479
Target:  5'- aGCGgCCCCGGugCaCGUAgagcaccGGGCCGc -3'
miRNA:   3'- -UGCgGGGGCCugGgGCAUau-----UCCGGC- -5'
11145 3' -61.3 NC_002794.1 + 58042 0.71 0.47072
Target:  5'- cGCGCCgCCCGu-CCCCGUcgGcGGCCc -3'
miRNA:   3'- -UGCGG-GGGCcuGGGGCAuaUuCCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.