miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 55197 0.66 0.808438
Target:  5'- gGCCCuaacaCCGG-CgCgGcg-GAGGCCGGCg -3'
miRNA:   3'- -CGGG-----GGCCuGgGgCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 54844 0.66 0.808438
Target:  5'- gGCaCCCa--ACgCCCGU---AGGCCGGCg -3'
miRNA:   3'- -CG-GGGgccUG-GGGCAuauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61139 0.66 0.808438
Target:  5'- cGCCCCUGcugccgcccGACCCCGagcgcgcgGUccGGaUCGGCg -3'
miRNA:   3'- -CGGGGGC---------CUGGGGCa-------UAuuCC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 22373 0.66 0.808438
Target:  5'- -aCCCCGG-UCCCG-AUccGGUCGGg -3'
miRNA:   3'- cgGGGGCCuGGGGCaUAuuCCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 93989 0.66 0.803433
Target:  5'- cGCUCggcgCGGACgCCGgcgccggcggcGGGCCGGCg -3'
miRNA:   3'- -CGGGg---GCCUGgGGCauau-------UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 126111 0.66 0.800912
Target:  5'- cGgCCCUGGGCgCCGcgcucgucugcgccgGUuucuGGCCGGCc -3'
miRNA:   3'- -CgGGGGCCUGgGGCa--------------UAuu--CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 26103 0.66 0.800069
Target:  5'- gGCCCCgGcGAUCgCCGU---GGGCCuGCc -3'
miRNA:   3'- -CGGGGgC-CUGG-GGCAuauUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 26635 0.66 0.800069
Target:  5'- cGCgUCCGcGCaCCCGgacggcGGCCGGCu -3'
miRNA:   3'- -CGgGGGCcUG-GGGCauauu-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 184224 0.66 0.800069
Target:  5'- aGCUCCCGGcccaguUCCCGgcccAGGCucCGGCc -3'
miRNA:   3'- -CGGGGGCCu-----GGGGCauauUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 61046 0.66 0.800069
Target:  5'- uGCUCCUGGGcauCCCCGUGcacGGGCaCuGCu -3'
miRNA:   3'- -CGGGGGCCU---GGGGCAUau-UCCG-GcCG- -5'
11146 3' -60.8 NC_002794.1 + 63912 0.66 0.800069
Target:  5'- cGCUCgcgCCGcGACCgCCGccc--GGCCGGCg -3'
miRNA:   3'- -CGGG---GGC-CUGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 100812 0.66 0.800069
Target:  5'- cGCCUacgugCCGGGCggCGg---GGGCCGGCa -3'
miRNA:   3'- -CGGG-----GGCCUGggGCauauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 129490 0.66 0.800069
Target:  5'- cGCCCgaauCCGGuuUCCGUGUcgccgccgcGGUCGGCg -3'
miRNA:   3'- -CGGG----GGCCugGGGCAUAuu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61512 0.66 0.800069
Target:  5'- cGCCCgCCGGACggCGgcc---GCCGGCg -3'
miRNA:   3'- -CGGG-GGCCUGggGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 78921 0.66 0.800069
Target:  5'- cGUCCCguCGGGCaCCCGcc----GCCGGCa -3'
miRNA:   3'- -CGGGG--GCCUG-GGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 98970 0.66 0.800069
Target:  5'- cGCCgUCGGcgGCgCCGUGgccucgguGGUCGGCg -3'
miRNA:   3'- -CGGgGGCC--UGgGGCAUauu-----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 35982 0.66 0.798379
Target:  5'- cGCUCgCGGACCCgGUuuuauugucgcGGGGCUcgGGCg -3'
miRNA:   3'- -CGGGgGCCUGGGgCAua---------UUCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 186116 0.66 0.796683
Target:  5'- cGCCgCCGGGuCCCCGgaucuccaGCaCGGCc -3'
miRNA:   3'- -CGGgGGCCU-GGGGCauauuc--CG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 143707 0.66 0.791564
Target:  5'- uGCCCaccgCGGGCCCC------GGCgGGCg -3'
miRNA:   3'- -CGGGg---GCCUGGGGcauauuCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 111102 0.66 0.791564
Target:  5'- gGCCCggCgGGACCguggCCGUcgAcGGcGCCGGCg -3'
miRNA:   3'- -CGGG--GgCCUGG----GGCAuaU-UC-CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.