Results 61 - 80 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 152093 | 0.67 | 0.747276 |
Target: 5'- uGCCCUgGGAuaCCgCCGUcUGGGGCUuGCu -3' miRNA: 3'- -CGGGGgCCU--GG-GGCAuAUUCCGGcCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 185760 | 0.67 | 0.747276 |
Target: 5'- aGCCgCCGGcGCggccgCCCGUcacacgucGGCCGGCg -3' miRNA: 3'- -CGGgGGCC-UG-----GGGCAuauu----CCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 62327 | 0.67 | 0.746364 |
Target: 5'- cGCCCCucgcuggCGGAgCCCGc-----GCCGGCg -3' miRNA: 3'- -CGGGG-------GCCUgGGGCauauucCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 44512 | 0.68 | 0.685541 |
Target: 5'- gGCCCagaCCGGG-CCCGUGUccgcGAGcgcgccgucgucgucGCCGGCg -3' miRNA: 3'- -CGGG---GGCCUgGGGCAUA----UUC---------------CGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 184287 | 0.68 | 0.681722 |
Target: 5'- cGUCCCCGGccgccgccuCCCCGUcccAGaGCaCGGCu -3' miRNA: 3'- -CGGGGGCCu--------GGGGCAuauUC-CG-GCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 137412 | 0.68 | 0.681722 |
Target: 5'- cGUCCgCGGACgCCGcg-GAGaccgcGCCGGCg -3' miRNA: 3'- -CGGGgGCCUGgGGCauaUUC-----CGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 84604 | 0.68 | 0.679811 |
Target: 5'- -aCCCC-GACCCCGacccccaGCCGGCg -3' miRNA: 3'- cgGGGGcCUGGGGCauauuc-CGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 194510 | 0.68 | 0.672152 |
Target: 5'- gGCCCgCGG-CCCgCGUGcc--GCCGGCc -3' miRNA: 3'- -CGGGgGCCuGGG-GCAUauucCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 107034 | 0.68 | 0.672152 |
Target: 5'- cGCCgCUggGGACCCCcgcGUcgGAGG-CGGCg -3' miRNA: 3'- -CGGgGG--CCUGGGG---CAuaUUCCgGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 88 | 0.68 | 0.672152 |
Target: 5'- cGCCCCCGaGGCacaCCGaac---GCCGGCc -3' miRNA: 3'- -CGGGGGC-CUGg--GGCauauucCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 74039 | 0.68 | 0.691256 |
Target: 5'- gGCCCCCGaGCCCCGagccccgacgucUGgcucAAGGUggCGGCc -3' miRNA: 3'- -CGGGGGCcUGGGGC------------AUa---UUCCG--GCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 48986 | 0.68 | 0.691256 |
Target: 5'- aGCCUCCaGGCCCCGUucgAAGcucucccgcGCCgcGGCg -3' miRNA: 3'- -CGGGGGcCUGGGGCAua-UUC---------CGG--CCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 16360 | 0.68 | 0.691256 |
Target: 5'- cGCCaCCCGcACCCgCGUGcacggcGGCCGGg -3' miRNA: 3'- -CGG-GGGCcUGGG-GCAUauu---CCGGCCg -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 13779 | 0.68 | 0.692207 |
Target: 5'- aGCCaCCCGGgugGCUCCGgccgucuucgcgacgGgcccGGCCGGCg -3' miRNA: 3'- -CGG-GGGCC---UGGGGCa--------------Uauu-CCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 135456 | 0.68 | 0.700746 |
Target: 5'- gGCUCCCGGGgCCCGc----GGCCGa- -3' miRNA: 3'- -CGGGGGCCUgGGGCauauuCCGGCcg -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 45890 | 0.68 | 0.700746 |
Target: 5'- uGCCCgaCCGaGCCCCGcccgccGCCGGCa -3' miRNA: 3'- -CGGG--GGCcUGGGGCauauucCGGCCG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 86181 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 86541 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 86373 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
|||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 186950 | 0.68 | 0.662553 |
Target: 5'- gGCCCCCGGGCCgCu-----GGCCGccGCc -3' miRNA: 3'- -CGGGGGCCUGGgGcauauuCCGGC--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home