Results 81 - 100 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 13779 | 0.68 | 0.692207 |
Target: 5'- aGCCaCCCGGgugGCUCCGgccgucuucgcgacgGgcccGGCCGGCg -3' miRNA: 3'- -CGG-GGGCC---UGGGGCa--------------Uauu-CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 16360 | 0.68 | 0.691256 |
Target: 5'- cGCCaCCCGcACCCgCGUGcacggcGGCCGGg -3' miRNA: 3'- -CGG-GGGCcUGGG-GCAUauu---CCGGCCg -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 48986 | 0.68 | 0.691256 |
Target: 5'- aGCCUCCaGGCCCCGUucgAAGcucucccgcGCCgcGGCg -3' miRNA: 3'- -CGGGGGcCUGGGGCAua-UUC---------CGG--CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 74039 | 0.68 | 0.691256 |
Target: 5'- gGCCCCCGaGCCCCGagccccgacgucUGgcucAAGGUggCGGCc -3' miRNA: 3'- -CGGGGGCcUGGGGC------------AUa---UUCCG--GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 62327 | 0.67 | 0.746364 |
Target: 5'- cGCCCCucgcuggCGGAgCCCGc-----GCCGGCg -3' miRNA: 3'- -CGGGG-------GCCUgGGGCauauucCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 152093 | 0.67 | 0.747276 |
Target: 5'- uGCCCUgGGAuaCCgCCGUcUGGGGCUuGCu -3' miRNA: 3'- -CGGGGgCCU--GG-GGCAuAUUCCGGcCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 119758 | 0.67 | 0.747276 |
Target: 5'- -gCUCCGGACCagGUcgc-GGCCGGCc -3' miRNA: 3'- cgGGGGCCUGGggCAuauuCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 53717 | 0.67 | 0.754538 |
Target: 5'- cGCCCUCGGGguggaCCCGcgccaucGCCGGCc -3' miRNA: 3'- -CGGGGGCCUg----GGGCauauuc-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 23311 | 0.67 | 0.756344 |
Target: 5'- aGCCaCCCGGGuCCCCaauGUucgacGGuGCCGGUc -3' miRNA: 3'- -CGG-GGGCCU-GGGG---CAuau--UC-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 47738 | 0.67 | 0.756344 |
Target: 5'- aGCCCgCCGGGUCCaCGUGgc-GGCCguggucgcGGCa -3' miRNA: 3'- -CGGG-GGCCUGGG-GCAUauuCCGG--------CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 121386 | 0.67 | 0.738119 |
Target: 5'- cGCCgCCGGGa-CCGc----GGCCGGCg -3' miRNA: 3'- -CGGgGGCCUggGGCauauuCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 142441 | 0.67 | 0.746364 |
Target: 5'- uUCUCCgaggguaagcagaGGuCCCCG-AUGAGcGCCGGCa -3' miRNA: 3'- cGGGGG-------------CCuGGGGCaUAUUC-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 194755 | 0.67 | 0.738119 |
Target: 5'- aGCaCCCaCGGcgacuGCUCCGagaacGGCCGGCa -3' miRNA: 3'- -CG-GGG-GCC-----UGGGGCauauuCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 56171 | 0.67 | 0.738119 |
Target: 5'- cGgCCCCGGugCaCGUAgagcaccGGGCCgcGGCa -3' miRNA: 3'- -CgGGGGCCugGgGCAUau-----UCCGG--CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 185760 | 0.67 | 0.747276 |
Target: 5'- aGCCgCCGGcGCggccgCCCGUcacacgucGGCCGGCg -3' miRNA: 3'- -CGGgGGCC-UG-----GGGCAuauu----CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 183357 | 0.67 | 0.710186 |
Target: 5'- aGCgCgCCGGACCCCaGgucccGGCCGuGCc -3' miRNA: 3'- -CGgG-GGCCUGGGG-CauauuCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 16326 | 0.67 | 0.738119 |
Target: 5'- uCCCCCuG-CCCCu-----GGCCGGCa -3' miRNA: 3'- cGGGGGcCuGGGGcauauuCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 123763 | 0.67 | 0.728879 |
Target: 5'- cGCuUCCCGGGCguggacgccUCCGUGUugGAGGCggUGGCg -3' miRNA: 3'- -CG-GGGGCCUG---------GGGCAUA--UUCCG--GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 124480 | 0.67 | 0.728879 |
Target: 5'- cGCCgcacgCCCGGACCgCCGgaugGAGucgcGUCGGCc -3' miRNA: 3'- -CGG-----GGGCCUGG-GGCaua-UUC----CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 17675 | 0.67 | 0.710186 |
Target: 5'- cGCCgCCGG-CCCCGgcgGAGaCCGaGCc -3' miRNA: 3'- -CGGgGGCCuGGGGCauaUUCcGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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