miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 66942 0.84 0.079826
Target:  5'- cGCCCCCGaGGCCCUc---GAGGCCGGCg -3'
miRNA:   3'- -CGGGGGC-CUGGGGcauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 150518 0.83 0.097518
Target:  5'- uCCCCCuccucGGCCCCGUAgccGGGCCGGCg -3'
miRNA:   3'- cGGGGGc----CUGGGGCAUau-UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 35810 0.82 0.107699
Target:  5'- cGCCCCCGGACCCgGUuuccGGGCCGccGCc -3'
miRNA:   3'- -CGGGGGCCUGGGgCAuau-UCCGGC--CG- -5'
11146 3' -60.8 NC_002794.1 + 119681 0.81 0.141051
Target:  5'- cGUCCCCGGcguCUCCGgcUGcuGGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCu--GGGGCauAU--UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 151607 0.77 0.231788
Target:  5'- gGCCCgCGGuuCCUCGgcUGAcGGCCGGCa -3'
miRNA:   3'- -CGGGgGCCu-GGGGCauAUU-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 150585 0.77 0.248187
Target:  5'- uGCCCUCGGGCgCCCGag-GAcGGCCGGg -3'
miRNA:   3'- -CGGGGGCCUG-GGGCauaUU-CCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 121790 0.75 0.303151
Target:  5'- cCCCCCGG-CCaCCGcgaccGGCCGGCg -3'
miRNA:   3'- cGGGGGCCuGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 62790 0.75 0.330432
Target:  5'- cGCCUCCGGGCCCCuaccucuccggcacGCCGGCg -3'
miRNA:   3'- -CGGGGGCCUGGGGcauauuc-------CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 144905 0.74 0.337529
Target:  5'- cGCCgCUGGGCCCCGcc----GCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 179422 0.74 0.337529
Target:  5'- cCUCCCGGGCCCCGggcgcgGAGGCgUGGa -3'
miRNA:   3'- cGGGGGCCUGGGGCaua---UUCCG-GCCg -5'
11146 3' -60.8 NC_002794.1 + 132896 0.74 0.359481
Target:  5'- cGCCgCCCGGACCUgCGgc---GGCCGGUc -3'
miRNA:   3'- -CGG-GGGCCUGGG-GCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 66526 0.74 0.367016
Target:  5'- cGUCCCCGGGuCCgCG---AAGGUCGGCg -3'
miRNA:   3'- -CGGGGGCCU-GGgGCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 51358 0.74 0.374659
Target:  5'- aGCCgCCCGaGgcggccGCCCCGUcc--GGCCGGCg -3'
miRNA:   3'- -CGG-GGGC-C------UGGGGCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 123932 0.73 0.390266
Target:  5'- uGCCCCCGGGCaCCgCGUAccgucUGAG-CCGcGCg -3'
miRNA:   3'- -CGGGGGCCUG-GG-GCAU-----AUUCcGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 99243 0.73 0.398227
Target:  5'- aCCgCCGGACCCCGccgcgGAGGggcucgggggcuCCGGCg -3'
miRNA:   3'- cGGgGGCCUGGGGCaua--UUCC------------GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 24062 0.73 0.398227
Target:  5'- -gCCCCGGACcacaCCCGUGcgcccGGGCgGGCg -3'
miRNA:   3'- cgGGGGCCUG----GGGCAUau---UCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 71379 0.73 0.405481
Target:  5'- cGCCCCaGGACCUccuccacggucugCGgcUcGGGCCGGCc -3'
miRNA:   3'- -CGGGGgCCUGGG-------------GCauAuUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 186022 0.73 0.406292
Target:  5'- gGCCcgggCCCGGACCCgGgccccGGCUGGCc -3'
miRNA:   3'- -CGG----GGGCCUGGGgCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 182014 0.73 0.406292
Target:  5'- -gCCCgGGACCCCGgcguccGGGCCgccGGCg -3'
miRNA:   3'- cgGGGgCCUGGGGCauau--UCCGG---CCG- -5'
11146 3' -60.8 NC_002794.1 + 59180 0.72 0.431089
Target:  5'- aGCUgCUGGACCCCGUGgcGGucgacgcgcacGUCGGCg -3'
miRNA:   3'- -CGGgGGCCUGGGGCAUauUC-----------CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.