miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 85834 0.72 0.456751
Target:  5'- -aCCgUGGGCCUagcuUGUGUGAgGGCCGGCa -3'
miRNA:   3'- cgGGgGCCUGGG----GCAUAUU-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 112277 0.72 0.456751
Target:  5'- cGUCCUCGGcCUCCGUGUcGGG-CGGCc -3'
miRNA:   3'- -CGGGGGCCuGGGGCAUAuUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 147149 0.72 0.465486
Target:  5'- gGCCCCgGGGCCgCG---AGGGCCaGCu -3'
miRNA:   3'- -CGGGGgCCUGGgGCauaUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 28658 0.71 0.47964
Target:  5'- uCCCgCGGGCCCCGgaaccgccGCCGGUg -3'
miRNA:   3'- cGGGgGCCUGGGGCauauuc--CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 107155 0.71 0.481424
Target:  5'- cGCCCCCGGcgaggGCCgCCGcuacgcggcGGaGCCGGCg -3'
miRNA:   3'- -CGGGGGCC-----UGG-GGCauau-----UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 41856 0.71 0.483211
Target:  5'- aGCCCCa-GGCCgCCGggcAGGGCCGGg -3'
miRNA:   3'- -CGGGGgcCUGG-GGCauaUUCCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 91255 0.71 0.483211
Target:  5'- cGCUCgCGGACgCCGUucguGGaCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGgGGCAuauuCC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 60292 0.71 0.492194
Target:  5'- aCCCCUGGGCCUCGcagaAGGGCUcgcugGGCg -3'
miRNA:   3'- cGGGGGCCUGGGGCaua-UUCCGG-----CCG- -5'
11146 3' -60.8 NC_002794.1 + 68938 0.71 0.492194
Target:  5'- cGCCCgCGGGCCgCGgc----GCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGGgGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 179182 0.71 0.498528
Target:  5'- -gUCCCGGACCaCCGcaggcacgccccGGCCGGCg -3'
miRNA:   3'- cgGGGGCCUGG-GGCauauu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 111023 0.71 0.501254
Target:  5'- aGCUCCCGGuCgUCGUgAUccGGCUGGCg -3'
miRNA:   3'- -CGGGGGCCuGgGGCA-UAuuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 68850 0.71 0.501254
Target:  5'- gGUCCCCGacGACCCCGgagcucGGGcucGCCGGCc -3'
miRNA:   3'- -CGGGGGC--CUGGGGCaua---UUC---CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 71221 0.71 0.501254
Target:  5'- aGgUCCCGG-CCgCGUAguggcGGCCGGCg -3'
miRNA:   3'- -CgGGGGCCuGGgGCAUauu--CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 122988 0.71 0.501254
Target:  5'- cGCgCCUGGugCgggCCGUGcUGacGGGCCGGCu -3'
miRNA:   3'- -CGgGGGCCugG---GGCAU-AU--UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 195605 0.71 0.508555
Target:  5'- cGCCCCCGcgcuGGCgUCCGgcccaaacGGCCGGCg -3'
miRNA:   3'- -CGGGGGC----CUG-GGGCauauu---CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 188337 0.71 0.50947
Target:  5'- cGCCgCCGGcgGCgCCGUcgcgcccGUccGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC--UGgGGCA-------UAuuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 58044 0.71 0.510387
Target:  5'- cGCCgCCCGu-CCCCGUcgGcGGCCccGGCg -3'
miRNA:   3'- -CGG-GGGCcuGGGGCAuaUuCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 65744 0.71 0.514059
Target:  5'- gGCCUCCGacGGCCCCGcgccgccgccgcccgUgGUGGGGCCGaGCg -3'
miRNA:   3'- -CGGGGGC--CUGGGGC---------------A-UAUUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 86909 0.71 0.528853
Target:  5'- cGCCgaCCCGGugACgCCCGUGgcGGGCaGGCg -3'
miRNA:   3'- -CGG--GGGCC--UG-GGGCAUauUCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 64293 0.71 0.532577
Target:  5'- cGCCCaCCGcGGCCCCGUcGUGcuccgccaccaccccGGGCCGu- -3'
miRNA:   3'- -CGGG-GGC-CUGGGGCA-UAU---------------UCCGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.