miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 42569 0.7 0.538179
Target:  5'- aCCCCgcggCGGACCCgCGgacggaggAGGGCgCGGCg -3'
miRNA:   3'- cGGGG----GCCUGGG-GCaua-----UUCCG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 76507 0.7 0.538179
Target:  5'- -aCCCCGGccccgACCCCGUcccAGGCCaccGGCc -3'
miRNA:   3'- cgGGGGCC-----UGGGGCAuauUCCGG---CCG- -5'
11146 3' -60.8 NC_002794.1 + 22927 0.7 0.547561
Target:  5'- cGCCaaaCCGGcACCCauCGgcUGgccgacGGGCCGGCg -3'
miRNA:   3'- -CGGg--GGCC-UGGG--GCauAU------UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 131305 0.7 0.556994
Target:  5'- cGCCCgUGGucgucaccucGCCCUGggu--GGCCGGCu -3'
miRNA:   3'- -CGGGgGCC----------UGGGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61806 0.7 0.566472
Target:  5'- cGUCCCCGcucaucuccggcGGCCgCCGgc---GGCCGGCg -3'
miRNA:   3'- -CGGGGGC------------CUGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 57401 0.7 0.575992
Target:  5'- cGgCUCCGGcGCCCgCGU----GGCCGGCg -3'
miRNA:   3'- -CgGGGGCC-UGGG-GCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 184491 0.7 0.575992
Target:  5'- gGgCCCCGGACgCCCGggcggcgcGGGCCccgcgcgcGGCg -3'
miRNA:   3'- -CgGGGGCCUG-GGGCauau----UCCGG--------CCG- -5'
11146 3' -60.8 NC_002794.1 + 101268 0.7 0.575992
Target:  5'- cGCCCCCGG-CgCCGgu---GGCggCGGCg -3'
miRNA:   3'- -CGGGGGCCuGgGGCauauuCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 85442 0.7 0.57981
Target:  5'- aGCUUCUGGGCCgCGacaacaacauGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCUGGgGCauauu-----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 44705 0.7 0.583633
Target:  5'- cGCCCggCCGcGACCgCGgcgacgucGGCCGGCg -3'
miRNA:   3'- -CGGG--GGC-CUGGgGCauauu---CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 74351 0.7 0.583633
Target:  5'- aGCCUCCGGAguaucuacaCgCCGUGcuucgggggcGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCU---------GgGGCAUauu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 41949 0.7 0.58459
Target:  5'- cGCCCUCGGcgugcgcGgCCUGg--AAGGUCGGCu -3'
miRNA:   3'- -CGGGGGCC-------UgGGGCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 44269 0.69 0.601857
Target:  5'- gGCCgCCGGggacggaggaguccGCgCCCGcc--GGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC--------------UG-GGGCauauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 193999 0.69 0.60378
Target:  5'- cGCCCCCGGcuucgccuucgcgGCCgCCGcc----GCCGGCg -3'
miRNA:   3'- -CGGGGGCC-------------UGG-GGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 138744 0.69 0.604741
Target:  5'- gGUCCCCGGcCCuCCGg---GGGCCGaGUc -3'
miRNA:   3'- -CGGGGGCCuGG-GGCauauUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 99119 0.69 0.613405
Target:  5'- aGCCCCUGGAuuucuuuuUCCCGUAccuGGCgcagcagacccagCGGCa -3'
miRNA:   3'- -CGGGGGCCU--------GGGGCAUauuCCG-------------GCCG- -5'
11146 3' -60.8 NC_002794.1 + 85022 0.69 0.614369
Target:  5'- -gCCCCGGGCCCaCGcucggGUGccucGGGCCcGCg -3'
miRNA:   3'- cgGGGGCCUGGG-GCa----UAU----UCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 90957 0.69 0.618223
Target:  5'- cGCCgaggCCCGGGCCCgcuucggcguggccuCGUAccGGGCCgaGGCg -3'
miRNA:   3'- -CGG----GGGCCUGGG---------------GCAUauUCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 14765 0.69 0.623043
Target:  5'- aGCCgUCGaGGCCgcugaggCCGgc-GAGGCCGGCg -3'
miRNA:   3'- -CGGgGGC-CUGG-------GGCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 141128 0.69 0.633653
Target:  5'- cGCCaCCCGG-CUCCGaGUcgccGAaGCCGGCg -3'
miRNA:   3'- -CGG-GGGCCuGGGGCaUA----UUcCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.