miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 183626 0.69 0.633653
Target:  5'- cGCCCCCGcGcCCCCGacucgagcAGGGCCGc- -3'
miRNA:   3'- -CGGGGGC-CuGGGGCaua-----UUCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 131248 0.69 0.640404
Target:  5'- cGCCgCCGGACgCCGccggcaccaccGCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGgGGCauauuc-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 130675 0.69 0.642332
Target:  5'- gGCuCCgCCGcGGCCUCGUGgGAGGCgccguguCGGCa -3'
miRNA:   3'- -CG-GG-GGC-CUGGGGCAUaUUCCG-------GCCG- -5'
11146 3' -60.8 NC_002794.1 + 72705 0.69 0.643296
Target:  5'- uCCCCCGGGCCgaccaCCGUgcccAUGAcGGCCccgcgcucccgcGGCg -3'
miRNA:   3'- cGGGGGCCUGG-----GGCA----UAUU-CCGG------------CCG- -5'
11146 3' -60.8 NC_002794.1 + 61948 0.69 0.643296
Target:  5'- cGCCCCCaccGCCCCc---GAGGCCaGCg -3'
miRNA:   3'- -CGGGGGcc-UGGGGcauaUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 55072 0.68 0.662553
Target:  5'- cGCCCCCGGuCCCCGcca---GCC-GCu -3'
miRNA:   3'- -CGGGGGCCuGGGGCauauucCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 186950 0.68 0.662553
Target:  5'- gGCCCCCGGGCCgCu-----GGCCGccGCc -3'
miRNA:   3'- -CGGGGGCCUGGgGcauauuCCGGC--CG- -5'
11146 3' -60.8 NC_002794.1 + 88 0.68 0.672152
Target:  5'- cGCCCCCGaGGCacaCCGaac---GCCGGCc -3'
miRNA:   3'- -CGGGGGC-CUGg--GGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 107034 0.68 0.672152
Target:  5'- cGCCgCUggGGACCCCcgcGUcgGAGG-CGGCg -3'
miRNA:   3'- -CGGgGG--CCUGGGG---CAuaUUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 194510 0.68 0.672152
Target:  5'- gGCCCgCGG-CCCgCGUGcc--GCCGGCc -3'
miRNA:   3'- -CGGGgGCCuGGG-GCAUauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 84604 0.68 0.679811
Target:  5'- -aCCCC-GACCCCGacccccaGCCGGCg -3'
miRNA:   3'- cgGGGGcCUGGGGCauauuc-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 137412 0.68 0.681722
Target:  5'- cGUCCgCGGACgCCGcg-GAGaccgcGCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGgGGCauaUUC-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 184287 0.68 0.681722
Target:  5'- cGUCCCCGGccgccgccuCCCCGUcccAGaGCaCGGCu -3'
miRNA:   3'- -CGGGGGCCu--------GGGGCAuauUC-CG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 44512 0.68 0.685541
Target:  5'- gGCCCagaCCGGG-CCCGUGUccgcGAGcgcgccgucgucgucGCCGGCg -3'
miRNA:   3'- -CGGG---GGCCUgGGGCAUA----UUC---------------CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 74039 0.68 0.691256
Target:  5'- gGCCCCCGaGCCCCGagccccgacgucUGgcucAAGGUggCGGCc -3'
miRNA:   3'- -CGGGGGCcUGGGGC------------AUa---UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 48986 0.68 0.691256
Target:  5'- aGCCUCCaGGCCCCGUucgAAGcucucccgcGCCgcGGCg -3'
miRNA:   3'- -CGGGGGcCUGGGGCAua-UUC---------CGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 16360 0.68 0.691256
Target:  5'- cGCCaCCCGcACCCgCGUGcacggcGGCCGGg -3'
miRNA:   3'- -CGG-GGGCcUGGG-GCAUauu---CCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 13779 0.68 0.692207
Target:  5'- aGCCaCCCGGgugGCUCCGgccgucuucgcgacgGgcccGGCCGGCg -3'
miRNA:   3'- -CGG-GGGCC---UGGGGCa--------------Uauu-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 45890 0.68 0.700746
Target:  5'- uGCCCgaCCGaGCCCCGcccgccGCCGGCa -3'
miRNA:   3'- -CGGG--GGCcUGGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 86181 0.68 0.700746
Target:  5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3'
miRNA:   3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.