Results 101 - 120 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 47738 | 0.67 | 0.756344 |
Target: 5'- aGCCCgCCGGGUCCaCGUGgc-GGCCguggucgcGGCa -3' miRNA: 3'- -CGGG-GGCCUGGG-GCAUauuCCGG--------CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 23311 | 0.67 | 0.756344 |
Target: 5'- aGCCaCCCGGGuCCCCaauGUucgacGGuGCCGGUc -3' miRNA: 3'- -CGG-GGGCCU-GGGG---CAuau--UC-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 68725 | 0.67 | 0.756344 |
Target: 5'- -aCCCCGGgucuucgaacacACCCCG---GAGGCCGa- -3' miRNA: 3'- cgGGGGCC------------UGGGGCauaUUCCGGCcg -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 52910 | 0.67 | 0.756344 |
Target: 5'- cGCCgCCGucgccGCCgCCGUcgcucGGCCGGCa -3' miRNA: 3'- -CGGgGGCc----UGG-GGCAuauu-CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 76810 | 0.66 | 0.763529 |
Target: 5'- -aCCaCCGGACCggaCGUcacgccagcGGCCGGCg -3' miRNA: 3'- cgGG-GGCCUGGg--GCAuauu-----CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 21850 | 0.66 | 0.765314 |
Target: 5'- -aCCCCGaucGCCCCauugaacgGUccgcGAGGCCGGCc -3' miRNA: 3'- cgGGGGCc--UGGGGca------UA----UUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 183508 | 0.66 | 0.765314 |
Target: 5'- cGgCCCCGaGACCCaUGUcgc-GGCCGuGCg -3' miRNA: 3'- -CgGGGGC-CUGGG-GCAuauuCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 100929 | 0.66 | 0.765314 |
Target: 5'- gGCgCCC-GACUacaagcucaauaCCGUGUGcgagcucuaccuGGGCCGGCa -3' miRNA: 3'- -CGgGGGcCUGG------------GGCAUAU------------UCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 64375 | 0.66 | 0.768873 |
Target: 5'- aGCCCCCGcagccugcgccuccGCCCCGgccagAGGGCCa-- -3' miRNA: 3'- -CGGGGGCc-------------UGGGGCaua--UUCCGGccg -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 69732 | 0.66 | 0.774179 |
Target: 5'- uGCCgCCGGAgCgCCac----GGCCGGCg -3' miRNA: 3'- -CGGgGGCCUgG-GGcauauuCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 127081 | 0.66 | 0.774179 |
Target: 5'- cGCCCgCCGGACCggCUGga-GAGcGgCGGCu -3' miRNA: 3'- -CGGG-GGCCUGG--GGCauaUUC-CgGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 187478 | 0.66 | 0.774179 |
Target: 5'- cGCgCgCCGGGCCgaGgacGAGGCCGcGCa -3' miRNA: 3'- -CGgG-GGCCUGGggCauaUUCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 128825 | 0.66 | 0.774179 |
Target: 5'- --gCUCGGACUCUGUcugauccUGAGcGCCGGCg -3' miRNA: 3'- cggGGGCCUGGGGCAu------AUUC-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 180920 | 0.66 | 0.774179 |
Target: 5'- uCUCgCCGG-CgCCGUcgGAGGUCGGUc -3' miRNA: 3'- cGGG-GGCCuGgGGCAuaUUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 47351 | 0.66 | 0.781191 |
Target: 5'- gGCCUCCGGACgUUCGcgcucaagccGAGGCCGaGCc -3' miRNA: 3'- -CGGGGGCCUG-GGGCaua-------UUCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 131706 | 0.66 | 0.782932 |
Target: 5'- cCCCgaCCGGACCCCGagagcGAGcgaGCgGGCg -3' miRNA: 3'- cGGG--GGCCUGGGGCaua--UUC---CGgCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 187914 | 0.66 | 0.782932 |
Target: 5'- cGCCCgCCGGGCCCCGccgcgAccGUCGcGUc -3' miRNA: 3'- -CGGG-GGCCUGGGGCaua--UucCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 186475 | 0.66 | 0.782932 |
Target: 5'- cGCCCUCGc-UCCUGg--AGGGCCcGGCg -3' miRNA: 3'- -CGGGGGCcuGGGGCauaUUCCGG-CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 150389 | 0.66 | 0.782932 |
Target: 5'- cGCUCCCGGGCgCCCu-----GGUugCGGCa -3' miRNA: 3'- -CGGGGGCCUG-GGGcauauuCCG--GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 8168 | 0.66 | 0.782932 |
Target: 5'- uCCCCCGGGCCCgGcGUcccGcCCGGUu -3' miRNA: 3'- cGGGGGCCUGGGgCaUAuucC-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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