miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 141622 0.66 0.791564
Target:  5'- gGCUCgCGGuCUagcgaCGgg-AAGGCCGGCg -3'
miRNA:   3'- -CGGGgGCCuGGg----GCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 83886 0.66 0.791564
Target:  5'- cGgCCCCGGGCucggcgCCCGac-GAGcCCGGCa -3'
miRNA:   3'- -CgGGGGCCUG------GGGCauaUUCcGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 111102 0.66 0.791564
Target:  5'- gGCCCggCgGGACCguggCCGUcgAcGGcGCCGGCg -3'
miRNA:   3'- -CGGG--GgCCUGG----GGCAuaU-UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 143707 0.66 0.791564
Target:  5'- uGCCCaccgCGGGCCCC------GGCgGGCg -3'
miRNA:   3'- -CGGGg---GCCUGGGGcauauuCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 104431 0.66 0.791564
Target:  5'- cGCCggCCCGGACgCCGccgc-GGgCGGCc -3'
miRNA:   3'- -CGG--GGGCCUGgGGCauauuCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 51934 0.66 0.788988
Target:  5'- --aCCUGGACCCCGcGUucacguccaacaagAAGGCCuccgggaccGGCa -3'
miRNA:   3'- cggGGGCCUGGGGCaUA--------------UUCCGG---------CCG- -5'
11146 3' -60.8 NC_002794.1 + 96719 0.66 0.784668
Target:  5'- uCCCCCGGccgagccggcgacgACCgCCGgcgcgucucgcaagcGGCCGGCg -3'
miRNA:   3'- cGGGGGCC--------------UGG-GGCauauu----------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 150389 0.66 0.782932
Target:  5'- cGCUCCCGGGCgCCCu-----GGUugCGGCa -3'
miRNA:   3'- -CGGGGGCCUG-GGGcauauuCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 8168 0.66 0.782932
Target:  5'- uCCCCCGGGCCCgGcGUcccGcCCGGUu -3'
miRNA:   3'- cGGGGGCCUGGGgCaUAuucC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 186475 0.66 0.782932
Target:  5'- cGCCCUCGc-UCCUGg--AGGGCCcGGCg -3'
miRNA:   3'- -CGGGGGCcuGGGGCauaUUCCGG-CCG- -5'
11146 3' -60.8 NC_002794.1 + 187914 0.66 0.782932
Target:  5'- cGCCCgCCGGGCCCCGccgcgAccGUCGcGUc -3'
miRNA:   3'- -CGGG-GGCCUGGGGCaua--UucCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 131706 0.66 0.782932
Target:  5'- cCCCgaCCGGACCCCGagagcGAGcgaGCgGGCg -3'
miRNA:   3'- cGGG--GGCCUGGGGCaua--UUC---CGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 47351 0.66 0.781191
Target:  5'- gGCCUCCGGACgUUCGcgcucaagccGAGGCCGaGCc -3'
miRNA:   3'- -CGGGGGCCUG-GGGCaua-------UUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 180920 0.66 0.774179
Target:  5'- uCUCgCCGG-CgCCGUcgGAGGUCGGUc -3'
miRNA:   3'- cGGG-GGCCuGgGGCAuaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 128825 0.66 0.774179
Target:  5'- --gCUCGGACUCUGUcugauccUGAGcGCCGGCg -3'
miRNA:   3'- cggGGGCCUGGGGCAu------AUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 187478 0.66 0.774179
Target:  5'- cGCgCgCCGGGCCgaGgacGAGGCCGcGCa -3'
miRNA:   3'- -CGgG-GGCCUGGggCauaUUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 69732 0.66 0.774179
Target:  5'- uGCCgCCGGAgCgCCac----GGCCGGCg -3'
miRNA:   3'- -CGGgGGCCUgG-GGcauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 127081 0.66 0.774179
Target:  5'- cGCCCgCCGGACCggCUGga-GAGcGgCGGCu -3'
miRNA:   3'- -CGGG-GGCCUGG--GGCauaUUC-CgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 64375 0.66 0.768873
Target:  5'- aGCCCCCGcagccugcgccuccGCCCCGgccagAGGGCCa-- -3'
miRNA:   3'- -CGGGGGCc-------------UGGGGCaua--UUCCGGccg -5'
11146 3' -60.8 NC_002794.1 + 21850 0.66 0.765314
Target:  5'- -aCCCCGaucGCCCCauugaacgGUccgcGAGGCCGGCc -3'
miRNA:   3'- cgGGGGCc--UGGGGca------UA----UUCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.