miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 21850 0.66 0.765314
Target:  5'- -aCCCCGaucGCCCCauugaacgGUccgcGAGGCCGGCc -3'
miRNA:   3'- cgGGGGCc--UGGGGca------UA----UUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 100929 0.66 0.765314
Target:  5'- gGCgCCC-GACUacaagcucaauaCCGUGUGcgagcucuaccuGGGCCGGCa -3'
miRNA:   3'- -CGgGGGcCUGG------------GGCAUAU------------UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 76810 0.66 0.763529
Target:  5'- -aCCaCCGGACCggaCGUcacgccagcGGCCGGCg -3'
miRNA:   3'- cgGG-GGCCUGGg--GCAuauu-----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 23311 0.67 0.756344
Target:  5'- aGCCaCCCGGGuCCCCaauGUucgacGGuGCCGGUc -3'
miRNA:   3'- -CGG-GGGCCU-GGGG---CAuau--UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 47738 0.67 0.756344
Target:  5'- aGCCCgCCGGGUCCaCGUGgc-GGCCguggucgcGGCa -3'
miRNA:   3'- -CGGG-GGCCUGGG-GCAUauuCCGG--------CCG- -5'
11146 3' -60.8 NC_002794.1 + 68725 0.67 0.756344
Target:  5'- -aCCCCGGgucuucgaacacACCCCG---GAGGCCGa- -3'
miRNA:   3'- cgGGGGCC------------UGGGGCauaUUCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 52910 0.67 0.756344
Target:  5'- cGCCgCCGucgccGCCgCCGUcgcucGGCCGGCa -3'
miRNA:   3'- -CGGgGGCc----UGG-GGCAuauu-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 53717 0.67 0.754538
Target:  5'- cGCCCUCGGGguggaCCCGcgccaucGCCGGCc -3'
miRNA:   3'- -CGGGGGCCUg----GGGCauauuc-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 119758 0.67 0.747276
Target:  5'- -gCUCCGGACCagGUcgc-GGCCGGCc -3'
miRNA:   3'- cgGGGGCCUGGggCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 152093 0.67 0.747276
Target:  5'- uGCCCUgGGAuaCCgCCGUcUGGGGCUuGCu -3'
miRNA:   3'- -CGGGGgCCU--GG-GGCAuAUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 185760 0.67 0.747276
Target:  5'- aGCCgCCGGcGCggccgCCCGUcacacgucGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC-UG-----GGGCAuauu----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 142441 0.67 0.746364
Target:  5'- uUCUCCgaggguaagcagaGGuCCCCG-AUGAGcGCCGGCa -3'
miRNA:   3'- cGGGGG-------------CCuGGGGCaUAUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 62327 0.67 0.746364
Target:  5'- cGCCCCucgcuggCGGAgCCCGc-----GCCGGCg -3'
miRNA:   3'- -CGGGG-------GCCUgGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 121386 0.67 0.738119
Target:  5'- cGCCgCCGGGa-CCGc----GGCCGGCg -3'
miRNA:   3'- -CGGgGGCCUggGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 194755 0.67 0.738119
Target:  5'- aGCaCCCaCGGcgacuGCUCCGagaacGGCCGGCa -3'
miRNA:   3'- -CG-GGG-GCC-----UGGGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 56171 0.67 0.738119
Target:  5'- cGgCCCCGGugCaCGUAgagcaccGGGCCgcGGCa -3'
miRNA:   3'- -CgGGGGCCugGgGCAUau-----UCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 67916 0.67 0.738119
Target:  5'- gGCUCCCGGcucuCCCCGagcgacGGGGCgaUGGCc -3'
miRNA:   3'- -CGGGGGCCu---GGGGCaua---UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 16326 0.67 0.738119
Target:  5'- uCCCCCuG-CCCCu-----GGCCGGCa -3'
miRNA:   3'- cGGGGGcCuGGGGcauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 123763 0.67 0.728879
Target:  5'- cGCuUCCCGGGCguggacgccUCCGUGUugGAGGCggUGGCg -3'
miRNA:   3'- -CG-GGGGCCUG---------GGGCAUA--UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 124480 0.67 0.728879
Target:  5'- cGCCgcacgCCCGGACCgCCGgaugGAGucgcGUCGGCc -3'
miRNA:   3'- -CGG-----GGGCCUGG-GGCaua-UUC----CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.