Results 81 - 100 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 55072 | 0.68 | 0.662553 |
Target: 5'- cGCCCCCGGuCCCCGcca---GCC-GCu -3' miRNA: 3'- -CGGGGGCCuGGGGCauauucCGGcCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 186950 | 0.68 | 0.662553 |
Target: 5'- gGCCCCCGGGCCgCu-----GGCCGccGCc -3' miRNA: 3'- -CGGGGGCCUGGgGcauauuCCGGC--CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 72705 | 0.69 | 0.643296 |
Target: 5'- uCCCCCGGGCCgaccaCCGUgcccAUGAcGGCCccgcgcucccgcGGCg -3' miRNA: 3'- cGGGGGCCUGG-----GGCA----UAUU-CCGG------------CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 61948 | 0.69 | 0.643296 |
Target: 5'- cGCCCCCaccGCCCCc---GAGGCCaGCg -3' miRNA: 3'- -CGGGGGcc-UGGGGcauaUUCCGGcCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 130675 | 0.69 | 0.642332 |
Target: 5'- gGCuCCgCCGcGGCCUCGUGgGAGGCgccguguCGGCa -3' miRNA: 3'- -CG-GG-GGC-CUGGGGCAUaUUCCG-------GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 131248 | 0.69 | 0.640404 |
Target: 5'- cGCCgCCGGACgCCGccggcaccaccGCCGGCa -3' miRNA: 3'- -CGGgGGCCUGgGGCauauuc-----CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 183626 | 0.69 | 0.633653 |
Target: 5'- cGCCCCCGcGcCCCCGacucgagcAGGGCCGc- -3' miRNA: 3'- -CGGGGGC-CuGGGGCaua-----UUCCGGCcg -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 141128 | 0.69 | 0.633653 |
Target: 5'- cGCCaCCCGG-CUCCGaGUcgccGAaGCCGGCg -3' miRNA: 3'- -CGG-GGGCCuGGGGCaUA----UUcCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 14765 | 0.69 | 0.623043 |
Target: 5'- aGCCgUCGaGGCCgcugaggCCGgc-GAGGCCGGCg -3' miRNA: 3'- -CGGgGGC-CUGG-------GGCauaUUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 90957 | 0.69 | 0.618223 |
Target: 5'- cGCCgaggCCCGGGCCCgcuucggcguggccuCGUAccGGGCCgaGGCg -3' miRNA: 3'- -CGG----GGGCCUGGG---------------GCAUauUCCGG--CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 85022 | 0.69 | 0.614369 |
Target: 5'- -gCCCCGGGCCCaCGcucggGUGccucGGGCCcGCg -3' miRNA: 3'- cgGGGGCCUGGG-GCa----UAU----UCCGGcCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 99119 | 0.69 | 0.613405 |
Target: 5'- aGCCCCUGGAuuucuuuuUCCCGUAccuGGCgcagcagacccagCGGCa -3' miRNA: 3'- -CGGGGGCCU--------GGGGCAUauuCCG-------------GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 138744 | 0.69 | 0.604741 |
Target: 5'- gGUCCCCGGcCCuCCGg---GGGCCGaGUc -3' miRNA: 3'- -CGGGGGCCuGG-GGCauauUCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 193999 | 0.69 | 0.60378 |
Target: 5'- cGCCCCCGGcuucgccuucgcgGCCgCCGcc----GCCGGCg -3' miRNA: 3'- -CGGGGGCC-------------UGG-GGCauauucCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 44269 | 0.69 | 0.601857 |
Target: 5'- gGCCgCCGGggacggaggaguccGCgCCCGcc--GGGCCGGCg -3' miRNA: 3'- -CGGgGGCC--------------UG-GGGCauauUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 41949 | 0.7 | 0.58459 |
Target: 5'- cGCCCUCGGcgugcgcGgCCUGg--AAGGUCGGCu -3' miRNA: 3'- -CGGGGGCC-------UgGGGCauaUUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 74351 | 0.7 | 0.583633 |
Target: 5'- aGCCUCCGGAguaucuacaCgCCGUGcuucgggggcGGCCGGCg -3' miRNA: 3'- -CGGGGGCCU---------GgGGCAUauu-------CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 44705 | 0.7 | 0.583633 |
Target: 5'- cGCCCggCCGcGACCgCGgcgacgucGGCCGGCg -3' miRNA: 3'- -CGGG--GGC-CUGGgGCauauu---CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 85442 | 0.7 | 0.57981 |
Target: 5'- aGCUUCUGGGCCgCGacaacaacauGGCCGGCg -3' miRNA: 3'- -CGGGGGCCUGGgGCauauu-----CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 184491 | 0.7 | 0.575992 |
Target: 5'- gGgCCCCGGACgCCCGggcggcgcGGGCCccgcgcgcGGCg -3' miRNA: 3'- -CgGGGGCCUG-GGGCauau----UCCGG--------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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