miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 41949 0.7 0.58459
Target:  5'- cGCCCUCGGcgugcgcGgCCUGg--AAGGUCGGCu -3'
miRNA:   3'- -CGGGGGCC-------UgGGGCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 42569 0.7 0.538179
Target:  5'- aCCCCgcggCGGACCCgCGgacggaggAGGGCgCGGCg -3'
miRNA:   3'- cGGGG----GCCUGGG-GCaua-----UUCCG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 44269 0.69 0.601857
Target:  5'- gGCCgCCGGggacggaggaguccGCgCCCGcc--GGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC--------------UG-GGGCauauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 44512 0.68 0.685541
Target:  5'- gGCCCagaCCGGG-CCCGUGUccgcGAGcgcgccgucgucgucGCCGGCg -3'
miRNA:   3'- -CGGG---GGCCUgGGGCAUA----UUC---------------CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 44705 0.7 0.583633
Target:  5'- cGCCCggCCGcGACCgCGgcgacgucGGCCGGCg -3'
miRNA:   3'- -CGGG--GGC-CUGGgGCauauu---CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 45890 0.68 0.700746
Target:  5'- uGCCCgaCCGaGCCCCGcccgccGCCGGCa -3'
miRNA:   3'- -CGGG--GGCcUGGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 47351 0.66 0.781191
Target:  5'- gGCCUCCGGACgUUCGcgcucaagccGAGGCCGaGCc -3'
miRNA:   3'- -CGGGGGCCUG-GGGCaua-------UUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 47738 0.67 0.756344
Target:  5'- aGCCCgCCGGGUCCaCGUGgc-GGCCguggucgcGGCa -3'
miRNA:   3'- -CGGG-GGCCUGGG-GCAUauuCCGG--------CCG- -5'
11146 3' -60.8 NC_002794.1 + 48986 0.68 0.691256
Target:  5'- aGCCUCCaGGCCCCGUucgAAGcucucccgcGCCgcGGCg -3'
miRNA:   3'- -CGGGGGcCUGGGGCAua-UUC---------CGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 51358 0.74 0.374659
Target:  5'- aGCCgCCCGaGgcggccGCCCCGUcc--GGCCGGCg -3'
miRNA:   3'- -CGG-GGGC-C------UGGGGCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 51934 0.66 0.788988
Target:  5'- --aCCUGGACCCCGcGUucacguccaacaagAAGGCCuccgggaccGGCa -3'
miRNA:   3'- cggGGGCCUGGGGCaUA--------------UUCCGG---------CCG- -5'
11146 3' -60.8 NC_002794.1 + 52910 0.67 0.756344
Target:  5'- cGCCgCCGucgccGCCgCCGUcgcucGGCCGGCa -3'
miRNA:   3'- -CGGgGGCc----UGG-GGCAuauu-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 53717 0.67 0.754538
Target:  5'- cGCCCUCGGGguggaCCCGcgccaucGCCGGCc -3'
miRNA:   3'- -CGGGGGCCUg----GGGCauauuc-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 54844 0.66 0.808438
Target:  5'- gGCaCCCa--ACgCCCGU---AGGCCGGCg -3'
miRNA:   3'- -CG-GGGgccUG-GGGCAuauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 55072 0.68 0.662553
Target:  5'- cGCCCCCGGuCCCCGcca---GCC-GCu -3'
miRNA:   3'- -CGGGGGCCuGGGGCauauucCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 55197 0.66 0.808438
Target:  5'- gGCCCuaacaCCGG-CgCgGcg-GAGGCCGGCg -3'
miRNA:   3'- -CGGG-----GGCCuGgGgCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 56171 0.67 0.738119
Target:  5'- cGgCCCCGGugCaCGUAgagcaccGGGCCgcGGCa -3'
miRNA:   3'- -CgGGGGCCugGgGCAUau-----UCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 57401 0.7 0.575992
Target:  5'- cGgCUCCGGcGCCCgCGU----GGCCGGCg -3'
miRNA:   3'- -CgGGGGCC-UGGG-GCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 58044 0.71 0.510387
Target:  5'- cGCCgCCCGu-CCCCGUcgGcGGCCccGGCg -3'
miRNA:   3'- -CGG-GGGCcuGGGGCAuaUuCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 59180 0.72 0.431089
Target:  5'- aGCUgCUGGACCCCGUGgcGGucgacgcgcacGUCGGCg -3'
miRNA:   3'- -CGGgGGCCUGGGGCAUauUC-----------CGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.