miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 60292 0.71 0.492194
Target:  5'- aCCCCUGGGCCUCGcagaAGGGCUcgcugGGCg -3'
miRNA:   3'- cGGGGGCCUGGGGCaua-UUCCGG-----CCG- -5'
11146 3' -60.8 NC_002794.1 + 61046 0.66 0.800069
Target:  5'- uGCUCCUGGGcauCCCCGUGcacGGGCaCuGCu -3'
miRNA:   3'- -CGGGGGCCU---GGGGCAUau-UCCG-GcCG- -5'
11146 3' -60.8 NC_002794.1 + 61139 0.66 0.808438
Target:  5'- cGCCCCUGcugccgcccGACCCCGagcgcgcgGUccGGaUCGGCg -3'
miRNA:   3'- -CGGGGGC---------CUGGGGCa-------UAuuCC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61512 0.66 0.800069
Target:  5'- cGCCCgCCGGACggCGgcc---GCCGGCg -3'
miRNA:   3'- -CGGG-GGCCUGggGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61806 0.7 0.566472
Target:  5'- cGUCCCCGcucaucuccggcGGCCgCCGgc---GGCCGGCg -3'
miRNA:   3'- -CGGGGGC------------CUGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 61948 0.69 0.643296
Target:  5'- cGCCCCCaccGCCCCc---GAGGCCaGCg -3'
miRNA:   3'- -CGGGGGcc-UGGGGcauaUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 62327 0.67 0.746364
Target:  5'- cGCCCCucgcuggCGGAgCCCGc-----GCCGGCg -3'
miRNA:   3'- -CGGGG-------GCCUgGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 62790 0.75 0.330432
Target:  5'- cGCCUCCGGGCCCCuaccucuccggcacGCCGGCg -3'
miRNA:   3'- -CGGGGGCCUGGGGcauauuc-------CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 63912 0.66 0.800069
Target:  5'- cGCUCgcgCCGcGACCgCCGccc--GGCCGGCg -3'
miRNA:   3'- -CGGG---GGC-CUGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 64293 0.71 0.532577
Target:  5'- cGCCCaCCGcGGCCCCGUcGUGcuccgccaccaccccGGGCCGu- -3'
miRNA:   3'- -CGGG-GGC-CUGGGGCA-UAU---------------UCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 64375 0.66 0.768873
Target:  5'- aGCCCCCGcagccugcgccuccGCCCCGgccagAGGGCCa-- -3'
miRNA:   3'- -CGGGGGCc-------------UGGGGCaua--UUCCGGccg -5'
11146 3' -60.8 NC_002794.1 + 65744 0.71 0.514059
Target:  5'- gGCCUCCGacGGCCCCGcgccgccgccgcccgUgGUGGGGCCGaGCg -3'
miRNA:   3'- -CGGGGGC--CUGGGGC---------------A-UAUUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 66526 0.74 0.367016
Target:  5'- cGUCCCCGGGuCCgCG---AAGGUCGGCg -3'
miRNA:   3'- -CGGGGGCCU-GGgGCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 66942 0.84 0.079826
Target:  5'- cGCCCCCGaGGCCCUc---GAGGCCGGCg -3'
miRNA:   3'- -CGGGGGC-CUGGGGcauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 67916 0.67 0.738119
Target:  5'- gGCUCCCGGcucuCCCCGagcgacGGGGCgaUGGCc -3'
miRNA:   3'- -CGGGGGCCu---GGGGCaua---UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 68725 0.67 0.756344
Target:  5'- -aCCCCGGgucuucgaacacACCCCG---GAGGCCGa- -3'
miRNA:   3'- cgGGGGCC------------UGGGGCauaUUCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 68850 0.71 0.501254
Target:  5'- gGUCCCCGacGACCCCGgagcucGGGcucGCCGGCc -3'
miRNA:   3'- -CGGGGGC--CUGGGGCaua---UUC---CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 68938 0.71 0.492194
Target:  5'- cGCCCgCGGGCCgCGgc----GCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGGgGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 69732 0.66 0.774179
Target:  5'- uGCCgCCGGAgCgCCac----GGCCGGCg -3'
miRNA:   3'- -CGGgGGCCUgG-GGcauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 71221 0.71 0.501254
Target:  5'- aGgUCCCGG-CCgCGUAguggcGGCCGGCg -3'
miRNA:   3'- -CgGGGGCCuGGgGCAUauu--CCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.