miRNA display CGI


Results 61 - 80 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 71379 0.73 0.405481
Target:  5'- cGCCCCaGGACCUccuccacggucugCGgcUcGGGCCGGCc -3'
miRNA:   3'- -CGGGGgCCUGGG-------------GCauAuUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 72705 0.69 0.643296
Target:  5'- uCCCCCGGGCCgaccaCCGUgcccAUGAcGGCCccgcgcucccgcGGCg -3'
miRNA:   3'- cGGGGGCCUGG-----GGCA----UAUU-CCGG------------CCG- -5'
11146 3' -60.8 NC_002794.1 + 74039 0.68 0.691256
Target:  5'- gGCCCCCGaGCCCCGagccccgacgucUGgcucAAGGUggCGGCc -3'
miRNA:   3'- -CGGGGGCcUGGGGC------------AUa---UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 74351 0.7 0.583633
Target:  5'- aGCCUCCGGAguaucuacaCgCCGUGcuucgggggcGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCU---------GgGGCAUauu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 76507 0.7 0.538179
Target:  5'- -aCCCCGGccccgACCCCGUcccAGGCCaccGGCc -3'
miRNA:   3'- cgGGGGCC-----UGGGGCAuauUCCGG---CCG- -5'
11146 3' -60.8 NC_002794.1 + 76810 0.66 0.763529
Target:  5'- -aCCaCCGGACCggaCGUcacgccagcGGCCGGCg -3'
miRNA:   3'- cgGG-GGCCUGGg--GCAuauu-----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 78921 0.66 0.800069
Target:  5'- cGUCCCguCGGGCaCCCGcc----GCCGGCa -3'
miRNA:   3'- -CGGGG--GCCUG-GGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 83886 0.66 0.791564
Target:  5'- cGgCCCCGGGCucggcgCCCGac-GAGcCCGGCa -3'
miRNA:   3'- -CgGGGGCCUG------GGGCauaUUCcGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 84604 0.68 0.679811
Target:  5'- -aCCCC-GACCCCGacccccaGCCGGCg -3'
miRNA:   3'- cgGGGGcCUGGGGCauauuc-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 85022 0.69 0.614369
Target:  5'- -gCCCCGGGCCCaCGcucggGUGccucGGGCCcGCg -3'
miRNA:   3'- cgGGGGCCUGGG-GCa----UAU----UCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 85442 0.7 0.57981
Target:  5'- aGCUUCUGGGCCgCGacaacaacauGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCUGGgGCauauu-----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 85834 0.72 0.456751
Target:  5'- -aCCgUGGGCCUagcuUGUGUGAgGGCCGGCa -3'
miRNA:   3'- cgGGgGCCUGGG----GCAUAUU-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 86181 0.68 0.700746
Target:  5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3'
miRNA:   3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 86373 0.68 0.700746
Target:  5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3'
miRNA:   3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 86541 0.68 0.700746
Target:  5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3'
miRNA:   3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 86909 0.71 0.528853
Target:  5'- cGCCgaCCCGGugACgCCCGUGgcGGGCaGGCg -3'
miRNA:   3'- -CGG--GGGCC--UG-GGGCAUauUCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 90957 0.69 0.618223
Target:  5'- cGCCgaggCCCGGGCCCgcuucggcguggccuCGUAccGGGCCgaGGCg -3'
miRNA:   3'- -CGG----GGGCCUGGG---------------GCAUauUCCGG--CCG- -5'
11146 3' -60.8 NC_002794.1 + 91255 0.71 0.483211
Target:  5'- cGCUCgCGGACgCCGUucguGGaCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGgGGCAuauuCC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 92476 0.66 0.791564
Target:  5'- cGCUCUCGGGCCUcaaccggugCGUGgacGAGG-CGGCc -3'
miRNA:   3'- -CGGGGGCCUGGG---------GCAUa--UUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 93989 0.66 0.803433
Target:  5'- cGCUCggcgCGGACgCCGgcgccggcggcGGGCCGGCg -3'
miRNA:   3'- -CGGGg---GCCUGgGGCauau-------UCCGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.