miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 124480 0.67 0.728879
Target:  5'- cGCCgcacgCCCGGACCgCCGgaugGAGucgcGUCGGCc -3'
miRNA:   3'- -CGG-----GGGCCUGG-GGCaua-UUC----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 126111 0.66 0.800912
Target:  5'- cGgCCCUGGGCgCCGcgcucgucugcgccgGUuucuGGCCGGCc -3'
miRNA:   3'- -CgGGGGCCUGgGGCa--------------UAuu--CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 127081 0.66 0.774179
Target:  5'- cGCCCgCCGGACCggCUGga-GAGcGgCGGCu -3'
miRNA:   3'- -CGGG-GGCCUGG--GGCauaUUC-CgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 128825 0.66 0.774179
Target:  5'- --gCUCGGACUCUGUcugauccUGAGcGCCGGCg -3'
miRNA:   3'- cggGGGCCUGGGGCAu------AUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 129490 0.66 0.800069
Target:  5'- cGCCCgaauCCGGuuUCCGUGUcgccgccgcGGUCGGCg -3'
miRNA:   3'- -CGGG----GGCCugGGGCAUAuu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 130675 0.69 0.642332
Target:  5'- gGCuCCgCCGcGGCCUCGUGgGAGGCgccguguCGGCa -3'
miRNA:   3'- -CG-GG-GGC-CUGGGGCAUaUUCCG-------GCCG- -5'
11146 3' -60.8 NC_002794.1 + 131248 0.69 0.640404
Target:  5'- cGCCgCCGGACgCCGccggcaccaccGCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGgGGCauauuc-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 131305 0.7 0.556994
Target:  5'- cGCCCgUGGucgucaccucGCCCUGggu--GGCCGGCu -3'
miRNA:   3'- -CGGGgGCC----------UGGGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 131706 0.66 0.782932
Target:  5'- cCCCgaCCGGACCCCGagagcGAGcgaGCgGGCg -3'
miRNA:   3'- cGGG--GGCCUGGGGCaua--UUC---CGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 132896 0.74 0.359481
Target:  5'- cGCCgCCCGGACCUgCGgc---GGCCGGUc -3'
miRNA:   3'- -CGG-GGGCCUGGG-GCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 135456 0.68 0.700746
Target:  5'- gGCUCCCGGGgCCCGc----GGCCGa- -3'
miRNA:   3'- -CGGGGGCCUgGGGCauauuCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 137412 0.68 0.681722
Target:  5'- cGUCCgCGGACgCCGcg-GAGaccgcGCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGgGGCauaUUC-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 138744 0.69 0.604741
Target:  5'- gGUCCCCGGcCCuCCGg---GGGCCGaGUc -3'
miRNA:   3'- -CGGGGGCCuGG-GGCauauUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 141128 0.69 0.633653
Target:  5'- cGCCaCCCGG-CUCCGaGUcgccGAaGCCGGCg -3'
miRNA:   3'- -CGG-GGGCCuGGGGCaUA----UUcCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 141622 0.66 0.791564
Target:  5'- gGCUCgCGGuCUagcgaCGgg-AAGGCCGGCg -3'
miRNA:   3'- -CGGGgGCCuGGg----GCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 142441 0.67 0.746364
Target:  5'- uUCUCCgaggguaagcagaGGuCCCCG-AUGAGcGCCGGCa -3'
miRNA:   3'- cGGGGG-------------CCuGGGGCaUAUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 143707 0.66 0.791564
Target:  5'- uGCCCaccgCGGGCCCC------GGCgGGCg -3'
miRNA:   3'- -CGGGg---GCCUGGGGcauauuCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 144905 0.74 0.337529
Target:  5'- cGCCgCUGGGCCCCGcc----GCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 147149 0.72 0.465486
Target:  5'- gGCCCCgGGGCCgCG---AGGGCCaGCu -3'
miRNA:   3'- -CGGGGgCCUGGgGCauaUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 150389 0.66 0.782932
Target:  5'- cGCUCCCGGGCgCCCu-----GGUugCGGCa -3'
miRNA:   3'- -CGGGGGCCUG-GGGcauauuCCG--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.