miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 195605 0.71 0.508555
Target:  5'- cGCCCCCGcgcuGGCgUCCGgcccaaacGGCCGGCg -3'
miRNA:   3'- -CGGGGGC----CUG-GGGCauauu---CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 194755 0.67 0.738119
Target:  5'- aGCaCCCaCGGcgacuGCUCCGagaacGGCCGGCa -3'
miRNA:   3'- -CG-GGG-GCC-----UGGGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 194510 0.68 0.672152
Target:  5'- gGCCCgCGG-CCCgCGUGcc--GCCGGCc -3'
miRNA:   3'- -CGGGgGCCuGGG-GCAUauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 193999 0.69 0.60378
Target:  5'- cGCCCCCGGcuucgccuucgcgGCCgCCGcc----GCCGGCg -3'
miRNA:   3'- -CGGGGGCC-------------UGG-GGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 188337 0.71 0.50947
Target:  5'- cGCCgCCGGcgGCgCCGUcgcgcccGUccGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC--UGgGGCA-------UAuuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 187914 0.66 0.782932
Target:  5'- cGCCCgCCGGGCCCCGccgcgAccGUCGcGUc -3'
miRNA:   3'- -CGGG-GGCCUGGGGCaua--UucCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 187478 0.66 0.774179
Target:  5'- cGCgCgCCGGGCCgaGgacGAGGCCGcGCa -3'
miRNA:   3'- -CGgG-GGCCUGGggCauaUUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 186950 0.68 0.662553
Target:  5'- gGCCCCCGGGCCgCu-----GGCCGccGCc -3'
miRNA:   3'- -CGGGGGCCUGGgGcauauuCCGGC--CG- -5'
11146 3' -60.8 NC_002794.1 + 186475 0.66 0.782932
Target:  5'- cGCCCUCGc-UCCUGg--AGGGCCcGGCg -3'
miRNA:   3'- -CGGGGGCcuGGGGCauaUUCCGG-CCG- -5'
11146 3' -60.8 NC_002794.1 + 186116 0.66 0.796683
Target:  5'- cGCCgCCGGGuCCCCGgaucuccaGCaCGGCc -3'
miRNA:   3'- -CGGgGGCCU-GGGGCauauuc--CG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 186022 0.73 0.406292
Target:  5'- gGCCcgggCCCGGACCCgGgccccGGCUGGCc -3'
miRNA:   3'- -CGG----GGGCCUGGGgCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 185910 0.68 0.704529
Target:  5'- aUCCaCCGGGCCCCucgccaccGCCGGCc -3'
miRNA:   3'- cGGG-GGCCUGGGGcauauuc-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 185760 0.67 0.747276
Target:  5'- aGCCgCCGGcGCggccgCCCGUcacacgucGGCCGGCg -3'
miRNA:   3'- -CGGgGGCC-UG-----GGGCAuauu----CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 184491 0.7 0.575992
Target:  5'- gGgCCCCGGACgCCCGggcggcgcGGGCCccgcgcgcGGCg -3'
miRNA:   3'- -CgGGGGCCUG-GGGCauau----UCCGG--------CCG- -5'
11146 3' -60.8 NC_002794.1 + 184287 0.68 0.681722
Target:  5'- cGUCCCCGGccgccgccuCCCCGUcccAGaGCaCGGCu -3'
miRNA:   3'- -CGGGGGCCu--------GGGGCAuauUC-CG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 184224 0.66 0.800069
Target:  5'- aGCUCCCGGcccaguUCCCGgcccAGGCucCGGCc -3'
miRNA:   3'- -CGGGGGCCu-----GGGGCauauUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 183626 0.69 0.633653
Target:  5'- cGCCCCCGcGcCCCCGacucgagcAGGGCCGc- -3'
miRNA:   3'- -CGGGGGC-CuGGGGCaua-----UUCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 183508 0.66 0.765314
Target:  5'- cGgCCCCGaGACCCaUGUcgc-GGCCGuGCg -3'
miRNA:   3'- -CgGGGGC-CUGGG-GCAuauuCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 183357 0.67 0.710186
Target:  5'- aGCgCgCCGGACCCCaGgucccGGCCGuGCc -3'
miRNA:   3'- -CGgG-GGCCUGGGG-CauauuCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 182014 0.73 0.406292
Target:  5'- -gCCCgGGACCCCGgcguccGGGCCgccGGCg -3'
miRNA:   3'- cgGGGgCCUGGGGCauau--UCCGG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.