miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 180920 0.66 0.774179
Target:  5'- uCUCgCCGG-CgCCGUcgGAGGUCGGUc -3'
miRNA:   3'- cGGG-GGCCuGgGGCAuaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 179422 0.74 0.337529
Target:  5'- cCUCCCGGGCCCCGggcgcgGAGGCgUGGa -3'
miRNA:   3'- cGGGGGCCUGGGGCaua---UUCCG-GCCg -5'
11146 3' -60.8 NC_002794.1 + 179182 0.71 0.498528
Target:  5'- -gUCCCGGACCaCCGcaggcacgccccGGCCGGCg -3'
miRNA:   3'- cgGGGGCCUGG-GGCauauu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 152093 0.67 0.747276
Target:  5'- uGCCCUgGGAuaCCgCCGUcUGGGGCUuGCu -3'
miRNA:   3'- -CGGGGgCCU--GG-GGCAuAUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 151607 0.77 0.231788
Target:  5'- gGCCCgCGGuuCCUCGgcUGAcGGCCGGCa -3'
miRNA:   3'- -CGGGgGCCu-GGGGCauAUU-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 150585 0.77 0.248187
Target:  5'- uGCCCUCGGGCgCCCGag-GAcGGCCGGg -3'
miRNA:   3'- -CGGGGGCCUG-GGGCauaUU-CCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 150518 0.83 0.097518
Target:  5'- uCCCCCuccucGGCCCCGUAgccGGGCCGGCg -3'
miRNA:   3'- cGGGGGc----CUGGGGCAUau-UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 150389 0.66 0.782932
Target:  5'- cGCUCCCGGGCgCCCu-----GGUugCGGCa -3'
miRNA:   3'- -CGGGGGCCUG-GGGcauauuCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 147149 0.72 0.465486
Target:  5'- gGCCCCgGGGCCgCG---AGGGCCaGCu -3'
miRNA:   3'- -CGGGGgCCUGGgGCauaUUCCGGcCG- -5'
11146 3' -60.8 NC_002794.1 + 144905 0.74 0.337529
Target:  5'- cGCCgCUGGGCCCCGcc----GCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGGGGCauauucCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 143707 0.66 0.791564
Target:  5'- uGCCCaccgCGGGCCCC------GGCgGGCg -3'
miRNA:   3'- -CGGGg---GCCUGGGGcauauuCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 142441 0.67 0.746364
Target:  5'- uUCUCCgaggguaagcagaGGuCCCCG-AUGAGcGCCGGCa -3'
miRNA:   3'- cGGGGG-------------CCuGGGGCaUAUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 141622 0.66 0.791564
Target:  5'- gGCUCgCGGuCUagcgaCGgg-AAGGCCGGCg -3'
miRNA:   3'- -CGGGgGCCuGGg----GCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 141128 0.69 0.633653
Target:  5'- cGCCaCCCGG-CUCCGaGUcgccGAaGCCGGCg -3'
miRNA:   3'- -CGG-GGGCCuGGGGCaUA----UUcCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 138744 0.69 0.604741
Target:  5'- gGUCCCCGGcCCuCCGg---GGGCCGaGUc -3'
miRNA:   3'- -CGGGGGCCuGG-GGCauauUCCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 137412 0.68 0.681722
Target:  5'- cGUCCgCGGACgCCGcg-GAGaccgcGCCGGCg -3'
miRNA:   3'- -CGGGgGCCUGgGGCauaUUC-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 135456 0.68 0.700746
Target:  5'- gGCUCCCGGGgCCCGc----GGCCGa- -3'
miRNA:   3'- -CGGGGGCCUgGGGCauauuCCGGCcg -5'
11146 3' -60.8 NC_002794.1 + 132896 0.74 0.359481
Target:  5'- cGCCgCCCGGACCUgCGgc---GGCCGGUc -3'
miRNA:   3'- -CGG-GGGCCUGGG-GCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 131706 0.66 0.782932
Target:  5'- cCCCgaCCGGACCCCGagagcGAGcgaGCgGGCg -3'
miRNA:   3'- cGGG--GGCCUGGGGCaua--UUC---CGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 131305 0.7 0.556994
Target:  5'- cGCCCgUGGucgucaccucGCCCUGggu--GGCCGGCu -3'
miRNA:   3'- -CGGGgGCC----------UGGGGCauauuCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.