miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 131248 0.69 0.640404
Target:  5'- cGCCgCCGGACgCCGccggcaccaccGCCGGCa -3'
miRNA:   3'- -CGGgGGCCUGgGGCauauuc-----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 130675 0.69 0.642332
Target:  5'- gGCuCCgCCGcGGCCUCGUGgGAGGCgccguguCGGCa -3'
miRNA:   3'- -CG-GG-GGC-CUGGGGCAUaUUCCG-------GCCG- -5'
11146 3' -60.8 NC_002794.1 + 129490 0.66 0.800069
Target:  5'- cGCCCgaauCCGGuuUCCGUGUcgccgccgcGGUCGGCg -3'
miRNA:   3'- -CGGG----GGCCugGGGCAUAuu-------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 128825 0.66 0.774179
Target:  5'- --gCUCGGACUCUGUcugauccUGAGcGCCGGCg -3'
miRNA:   3'- cggGGGCCUGGGGCAu------AUUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 127081 0.66 0.774179
Target:  5'- cGCCCgCCGGACCggCUGga-GAGcGgCGGCu -3'
miRNA:   3'- -CGGG-GGCCUGG--GGCauaUUC-CgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 126111 0.66 0.800912
Target:  5'- cGgCCCUGGGCgCCGcgcucgucugcgccgGUuucuGGCCGGCc -3'
miRNA:   3'- -CgGGGGCCUGgGGCa--------------UAuu--CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 124480 0.67 0.728879
Target:  5'- cGCCgcacgCCCGGACCgCCGgaugGAGucgcGUCGGCc -3'
miRNA:   3'- -CGG-----GGGCCUGG-GGCaua-UUC----CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 123932 0.73 0.390266
Target:  5'- uGCCCCCGGGCaCCgCGUAccgucUGAG-CCGcGCg -3'
miRNA:   3'- -CGGGGGCCUG-GG-GCAU-----AUUCcGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 123763 0.67 0.728879
Target:  5'- cGCuUCCCGGGCguggacgccUCCGUGUugGAGGCggUGGCg -3'
miRNA:   3'- -CG-GGGGCCUG---------GGGCAUA--UUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 122988 0.71 0.501254
Target:  5'- cGCgCCUGGugCgggCCGUGcUGacGGGCCGGCu -3'
miRNA:   3'- -CGgGGGCCugG---GGCAU-AU--UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 121790 0.75 0.303151
Target:  5'- cCCCCCGG-CCaCCGcgaccGGCCGGCg -3'
miRNA:   3'- cGGGGGCCuGG-GGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 121386 0.67 0.738119
Target:  5'- cGCCgCCGGGa-CCGc----GGCCGGCg -3'
miRNA:   3'- -CGGgGGCCUggGGCauauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 119758 0.67 0.747276
Target:  5'- -gCUCCGGACCagGUcgc-GGCCGGCc -3'
miRNA:   3'- cgGGGGCCUGGggCAuauuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 119681 0.81 0.141051
Target:  5'- cGUCCCCGGcguCUCCGgcUGcuGGGCCGGCg -3'
miRNA:   3'- -CGGGGGCCu--GGGGCauAU--UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 112277 0.72 0.456751
Target:  5'- cGUCCUCGGcCUCCGUGUcGGG-CGGCc -3'
miRNA:   3'- -CGGGGGCCuGGGGCAUAuUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 111102 0.66 0.791564
Target:  5'- gGCCCggCgGGACCguggCCGUcgAcGGcGCCGGCg -3'
miRNA:   3'- -CGGG--GgCCUGG----GGCAuaU-UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 111023 0.71 0.501254
Target:  5'- aGCUCCCGGuCgUCGUgAUccGGCUGGCg -3'
miRNA:   3'- -CGGGGGCCuGgGGCA-UAuuCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 107155 0.71 0.481424
Target:  5'- cGCCCCCGGcgaggGCCgCCGcuacgcggcGGaGCCGGCg -3'
miRNA:   3'- -CGGGGGCC-----UGG-GGCauau-----UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 107034 0.68 0.672152
Target:  5'- cGCCgCUggGGACCCCcgcGUcgGAGG-CGGCg -3'
miRNA:   3'- -CGGgGG--CCUGGGG---CAuaUUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 104431 0.66 0.791564
Target:  5'- cGCCggCCCGGACgCCGccgc-GGgCGGCc -3'
miRNA:   3'- -CGG--GGGCCUGgGGCauauuCCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.