Results 61 - 80 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11146 | 3' | -60.8 | NC_002794.1 | + | 101268 | 0.7 | 0.575992 |
Target: 5'- cGCCCCCGG-CgCCGgu---GGCggCGGCg -3' miRNA: 3'- -CGGGGGCCuGgGGCauauuCCG--GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 100929 | 0.66 | 0.765314 |
Target: 5'- gGCgCCC-GACUacaagcucaauaCCGUGUGcgagcucuaccuGGGCCGGCa -3' miRNA: 3'- -CGgGGGcCUGG------------GGCAUAU------------UCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 100812 | 0.66 | 0.800069 |
Target: 5'- cGCCUacgugCCGGGCggCGg---GGGCCGGCa -3' miRNA: 3'- -CGGG-----GGCCUGggGCauauUCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 99243 | 0.73 | 0.398227 |
Target: 5'- aCCgCCGGACCCCGccgcgGAGGggcucgggggcuCCGGCg -3' miRNA: 3'- cGGgGGCCUGGGGCaua--UUCC------------GGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 99119 | 0.69 | 0.613405 |
Target: 5'- aGCCCCUGGAuuucuuuuUCCCGUAccuGGCgcagcagacccagCGGCa -3' miRNA: 3'- -CGGGGGCCU--------GGGGCAUauuCCG-------------GCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 98970 | 0.66 | 0.800069 |
Target: 5'- cGCCgUCGGcgGCgCCGUGgccucgguGGUCGGCg -3' miRNA: 3'- -CGGgGGCC--UGgGGCAUauu-----CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 96719 | 0.66 | 0.784668 |
Target: 5'- uCCCCCGGccgagccggcgacgACCgCCGgcgcgucucgcaagcGGCCGGCg -3' miRNA: 3'- cGGGGGCC--------------UGG-GGCauauu----------CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 93989 | 0.66 | 0.803433 |
Target: 5'- cGCUCggcgCGGACgCCGgcgccggcggcGGGCCGGCg -3' miRNA: 3'- -CGGGg---GCCUGgGGCauau-------UCCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 92476 | 0.66 | 0.791564 |
Target: 5'- cGCUCUCGGGCCUcaaccggugCGUGgacGAGG-CGGCc -3' miRNA: 3'- -CGGGGGCCUGGG---------GCAUa--UUCCgGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 91255 | 0.71 | 0.483211 |
Target: 5'- cGCUCgCGGACgCCGUucguGGaCCGGCg -3' miRNA: 3'- -CGGGgGCCUGgGGCAuauuCC-GGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 90957 | 0.69 | 0.618223 |
Target: 5'- cGCCgaggCCCGGGCCCgcuucggcguggccuCGUAccGGGCCgaGGCg -3' miRNA: 3'- -CGG----GGGCCUGGG---------------GCAUauUCCGG--CCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 86909 | 0.71 | 0.528853 |
Target: 5'- cGCCgaCCCGGugACgCCCGUGgcGGGCaGGCg -3' miRNA: 3'- -CGG--GGGCC--UG-GGGCAUauUCCGgCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 86541 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 86373 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 86181 | 0.68 | 0.700746 |
Target: 5'- -gCCCCGGGCCgagCCGggacggAUGcuccGGGCCGcGCc -3' miRNA: 3'- cgGGGGCCUGG---GGCa-----UAU----UCCGGC-CG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 85834 | 0.72 | 0.456751 |
Target: 5'- -aCCgUGGGCCUagcuUGUGUGAgGGCCGGCa -3' miRNA: 3'- cgGGgGCCUGGG----GCAUAUU-CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 85442 | 0.7 | 0.57981 |
Target: 5'- aGCUUCUGGGCCgCGacaacaacauGGCCGGCg -3' miRNA: 3'- -CGGGGGCCUGGgGCauauu-----CCGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 85022 | 0.69 | 0.614369 |
Target: 5'- -gCCCCGGGCCCaCGcucggGUGccucGGGCCcGCg -3' miRNA: 3'- cgGGGGCCUGGG-GCa----UAU----UCCGGcCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 84604 | 0.68 | 0.679811 |
Target: 5'- -aCCCC-GACCCCGacccccaGCCGGCg -3' miRNA: 3'- cgGGGGcCUGGGGCauauuc-CGGCCG- -5' |
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11146 | 3' | -60.8 | NC_002794.1 | + | 83886 | 0.66 | 0.791564 |
Target: 5'- cGgCCCCGGGCucggcgCCCGac-GAGcCCGGCa -3' miRNA: 3'- -CgGGGGCCUG------GGGCauaUUCcGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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