miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 3' -60.8 NC_002794.1 + 93989 0.66 0.803433
Target:  5'- cGCUCggcgCGGACgCCGgcgccggcggcGGGCCGGCg -3'
miRNA:   3'- -CGGGg---GCCUGgGGCauau-------UCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 126111 0.66 0.800912
Target:  5'- cGgCCCUGGGCgCCGcgcucgucugcgccgGUuucuGGCCGGCc -3'
miRNA:   3'- -CgGGGGCCUGgGGCa--------------UAuu--CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 22373 0.66 0.808438
Target:  5'- -aCCCCGG-UCCCG-AUccGGUCGGg -3'
miRNA:   3'- cgGGGGCCuGGGGCaUAuuCCGGCCg -5'
11146 3' -60.8 NC_002794.1 + 61139 0.66 0.808438
Target:  5'- cGCCCCUGcugccgcccGACCCCGagcgcgcgGUccGGaUCGGCg -3'
miRNA:   3'- -CGGGGGC---------CUGGGGCa-------UAuuCC-GGCCG- -5'
11146 3' -60.8 NC_002794.1 + 54844 0.66 0.808438
Target:  5'- gGCaCCCa--ACgCCCGU---AGGCCGGCg -3'
miRNA:   3'- -CG-GGGgccUG-GGGCAuauUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 184224 0.66 0.800069
Target:  5'- aGCUCCCGGcccaguUCCCGgcccAGGCucCGGCc -3'
miRNA:   3'- -CGGGGGCCu-----GGGGCauauUCCG--GCCG- -5'
11146 3' -60.8 NC_002794.1 + 26635 0.66 0.800069
Target:  5'- cGCgUCCGcGCaCCCGgacggcGGCCGGCu -3'
miRNA:   3'- -CGgGGGCcUG-GGGCauauu-CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 187914 0.66 0.782932
Target:  5'- cGCCCgCCGGGCCCCGccgcgAccGUCGcGUc -3'
miRNA:   3'- -CGGG-GGCCUGGGGCaua--UucCGGC-CG- -5'
11146 3' -60.8 NC_002794.1 + 131706 0.66 0.782932
Target:  5'- cCCCgaCCGGACCCCGagagcGAGcgaGCgGGCg -3'
miRNA:   3'- cGGG--GGCCUGGGGCaua--UUC---CGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 96719 0.66 0.784668
Target:  5'- uCCCCCGGccgagccggcgacgACCgCCGgcgcgucucgcaagcGGCCGGCg -3'
miRNA:   3'- cGGGGGCC--------------UGG-GGCauauu----------CCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 51934 0.66 0.788988
Target:  5'- --aCCUGGACCCCGcGUucacguccaacaagAAGGCCuccgggaccGGCa -3'
miRNA:   3'- cggGGGCCUGGGGCaUA--------------UUCCGG---------CCG- -5'
11146 3' -60.8 NC_002794.1 + 38565 0.66 0.791564
Target:  5'- aGCCCgCCGGcGCCUCGac--GGaGUCGGCc -3'
miRNA:   3'- -CGGG-GGCC-UGGGGCauauUC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 92476 0.66 0.791564
Target:  5'- cGCUCUCGGGCCUcaaccggugCGUGgacGAGG-CGGCc -3'
miRNA:   3'- -CGGGGGCCUGGG---------GCAUa--UUCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 141622 0.66 0.791564
Target:  5'- gGCUCgCGGuCUagcgaCGgg-AAGGCCGGCg -3'
miRNA:   3'- -CGGGgGCCuGGg----GCauaUUCCGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 83886 0.66 0.791564
Target:  5'- cGgCCCCGGGCucggcgCCCGac-GAGcCCGGCa -3'
miRNA:   3'- -CgGGGGCCUG------GGGCauaUUCcGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 111102 0.66 0.791564
Target:  5'- gGCCCggCgGGACCguggCCGUcgAcGGcGCCGGCg -3'
miRNA:   3'- -CGGG--GgCCUGG----GGCAuaU-UC-CGGCCG- -5'
11146 3' -60.8 NC_002794.1 + 143707 0.66 0.791564
Target:  5'- uGCCCaccgCGGGCCCC------GGCgGGCg -3'
miRNA:   3'- -CGGGg---GCCUGGGGcauauuCCGgCCG- -5'
11146 3' -60.8 NC_002794.1 + 104431 0.66 0.791564
Target:  5'- cGCCggCCCGGACgCCGccgc-GGgCGGCc -3'
miRNA:   3'- -CGG--GGGCCUGgGGCauauuCCgGCCG- -5'
11146 3' -60.8 NC_002794.1 + 186116 0.66 0.796683
Target:  5'- cGCCgCCGGGuCCCCGgaucuccaGCaCGGCc -3'
miRNA:   3'- -CGGgGGCCU-GGGGCauauuc--CG-GCCG- -5'
11146 3' -60.8 NC_002794.1 + 26103 0.66 0.800069
Target:  5'- gGCCCCgGcGAUCgCCGU---GGGCCuGCc -3'
miRNA:   3'- -CGGGGgC-CUGG-GGCAuauUCCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.