miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11146 5' -47.4 NC_002794.1 + 4167 0.66 0.999959
Target:  5'- -gGUagGGguCGUCGCGgugggucgucgAGGCAAGGCg -3'
miRNA:   3'- caCAa-CCguGCAGUGCa----------UCUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 3753 0.66 0.999959
Target:  5'- -----cGCGCGUCACGgcgGGGCGGGGg -3'
miRNA:   3'- cacaacCGUGCAGUGCa--UCUGUUUUg -5'
11146 5' -47.4 NC_002794.1 + 100379 0.66 0.999905
Target:  5'- ---gUGGCcgACGUCcgcgGCGUGGACGAcguGGCg -3'
miRNA:   3'- cacaACCG--UGCAG----UGCAUCUGUU---UUG- -5'
11146 5' -47.4 NC_002794.1 + 133551 0.66 0.999905
Target:  5'- -cGUUGuGCAcCGUCACG---GCGGAGCa -3'
miRNA:   3'- caCAAC-CGU-GCAGUGCaucUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 31901 0.67 0.999839
Target:  5'- ----cGGCGCGUCgcugaugaGCGccGACAGGACg -3'
miRNA:   3'- cacaaCCGUGCAG--------UGCauCUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 122183 0.67 0.999839
Target:  5'- ----cGGCGCG-CGCGUGugcgacgcGGCGAAGCg -3'
miRNA:   3'- cacaaCCGUGCaGUGCAU--------CUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 31489 0.67 0.999793
Target:  5'- -aGUUGaugauGCGCGUCACGUuguuccGGAacCAGAGCu -3'
miRNA:   3'- caCAAC-----CGUGCAGUGCA------UCU--GUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 146064 0.67 0.999793
Target:  5'- -aGgagUGGCGCGuUCACGUcacgucuuGGGCGGAGu -3'
miRNA:   3'- caCa--ACCGUGC-AGUGCA--------UCUGUUUUg -5'
11146 5' -47.4 NC_002794.1 + 149673 0.67 0.999665
Target:  5'- -cGggGGCGCGUCGCGcucGACu-GGCc -3'
miRNA:   3'- caCaaCCGUGCAGUGCau-CUGuuUUG- -5'
11146 5' -47.4 NC_002794.1 + 117673 0.67 0.999578
Target:  5'- -cGgcGGCGCGUacugCACGUAGGCcucGCa -3'
miRNA:   3'- caCaaCCGUGCA----GUGCAUCUGuuuUG- -5'
11146 5' -47.4 NC_002794.1 + 116738 0.69 0.998349
Target:  5'- cGUGUUGGCgacgccgccgaggaaGgCGgcugCAgGUAGGCGAAACa -3'
miRNA:   3'- -CACAACCG---------------U-GCa---GUgCAUCUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 115350 0.69 0.997452
Target:  5'- ----cGGCACGUC-CaGgcGACAGAGCg -3'
miRNA:   3'- cacaaCCGUGCAGuG-CauCUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 4836 0.7 0.994996
Target:  5'- uUGUUGGCcaccugcGCGgccCACGUGcccGACGAAGCg -3'
miRNA:   3'- cACAACCG-------UGCa--GUGCAU---CUGUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 125696 0.72 0.986829
Target:  5'- cGUGUUGcuGCGCGUgACGgUGGAgCGGAGCg -3'
miRNA:   3'- -CACAAC--CGUGCAgUGC-AUCU-GUUUUG- -5'
11146 5' -47.4 NC_002794.1 + 82129 0.72 0.981054
Target:  5'- ----cGGCguggGCGUCACGUGGGCGGAc- -3'
miRNA:   3'- cacaaCCG----UGCAGUGCAUCUGUUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.