Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 124476 | 0.66 | 0.864462 |
|
Target: 5'- uCGCCGCCgCAcgcccgGaCCgCCGGAUGGa -3' miRNA: 3'- -GUGGCGGaGUaa----CaGGgGGCCUACCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 46020 | 0.66 | 0.85707 |
|
Target: 5'- uCGCCGUCUCuAUUagacgaaaacGaUCCCCCGGAgcGGUc -3' miRNA: 3'- -GUGGCGGAG-UAA----------C-AGGGGGCCUa-CCA- -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 115784 | 0.66 | 0.85707 |
|
Target: 5'- gAUCGCCUCcgUGUaCCUCUGGAgcgucGGc -3' miRNA: 3'- gUGGCGGAGuaACA-GGGGGCCUa----CCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 50741 | 0.67 | 0.825655 |
|
Target: 5'- gGCCGCCUCGacucgcucGUCcgCCCCGGgcGGc -3' miRNA: 3'- gUGGCGGAGUaa------CAG--GGGGCCuaCCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 8152 | 0.67 | 0.80034 |
|
Target: 5'- gCACCGCUUCuccuucUCCCCCGGGcccGGc -3' miRNA: 3'- -GUGGCGGAGuaac--AGGGGGCCUa--CCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 186937 | 0.67 | 0.791607 |
|
Target: 5'- cCACCGCCgcCAcgG-CCCCCGGGccgcUGGc -3' miRNA: 3'- -GUGGCGGa-GUaaCaGGGGGCCU----ACCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 131301 | 0.68 | 0.74608 |
|
Target: 5'- cCGCCGCC-CGUgGUCgucaccucgCCCUGGGUGGc -3' miRNA: 3'- -GUGGCGGaGUAaCAG---------GGGGCCUACCa -5' |
|||||||
| 11147 | 5' | -58.5 | NC_002794.1 | + | 13767 | 0.69 | 0.698215 |
|
Target: 5'- uCGCCGCCcCGgag-CCaCCCGGGUGGc -3' miRNA: 3'- -GUGGCGGaGUaacaGG-GGGCCUACCa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home