miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11173 5' -49.2 NC_002816.1 + 23867 1.09 0.010443
Target:  5'- uCAACUUGUAACGUCGGUCGCGCAACAg -3'
miRNA:   3'- -GUUGAACAUUGCAGCCAGCGCGUUGU- -5'
11173 5' -49.2 NC_002816.1 + 120291 0.71 0.927004
Target:  5'- aCAAUUgc-GACuGUUGGUUGCGCAGCAc -3'
miRNA:   3'- -GUUGAacaUUG-CAGCCAGCGCGUUGU- -5'
11173 5' -49.2 NC_002816.1 + 37334 0.71 0.942711
Target:  5'- gUggUggGUGugGUCGGU-GUGCAGCAg -3'
miRNA:   3'- -GuuGaaCAUugCAGCCAgCGCGUUGU- -5'
11173 5' -49.2 NC_002816.1 + 537 0.7 0.956036
Target:  5'- gAACUUGUAGCaaCGGUUGgGguGCAu -3'
miRNA:   3'- gUUGAACAUUGcaGCCAGCgCguUGU- -5'
11173 5' -49.2 NC_002816.1 + 30771 0.69 0.970278
Target:  5'- uCAGCgUGUGuACGUCGGUCGCa----- -3'
miRNA:   3'- -GUUGaACAU-UGCAGCCAGCGcguugu -5'
11173 5' -49.2 NC_002816.1 + 7612 0.68 0.980868
Target:  5'- ----gUGUGGCGgugaGGUUGUGCGACGg -3'
miRNA:   3'- guugaACAUUGCag--CCAGCGCGUUGU- -5'
11173 5' -49.2 NC_002816.1 + 101137 0.68 0.984958
Target:  5'- gCGGCgUGaUGGCGagacaUCGGUCGCGCucACAa -3'
miRNA:   3'- -GUUGaAC-AUUGC-----AGCCAGCGCGu-UGU- -5'
11173 5' -49.2 NC_002816.1 + 34140 0.67 0.989801
Target:  5'- aGACaUUGUGA--UCGaauGUCGCGCAACAa -3'
miRNA:   3'- gUUG-AACAUUgcAGC---CAGCGCGUUGU- -5'
11173 5' -49.2 NC_002816.1 + 23524 0.67 0.993329
Target:  5'- cCAACcaaa---GUCGGUCGCGCAGu- -3'
miRNA:   3'- -GUUGaacauugCAGCCAGCGCGUUgu -5'
11173 5' -49.2 NC_002816.1 + 38925 0.66 0.995804
Target:  5'- gUAGCU-GUGACGaaacagguggUCGauGUUGCGCAACAc -3'
miRNA:   3'- -GUUGAaCAUUGC----------AGC--CAGCGCGUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.