miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11174 5' -43.3 NC_002816.1 + 44718 0.77 0.958402
Target:  5'- cCGACAUUGUCCGCUAucAGUUGUUu -3'
miRNA:   3'- uGUUGUAGUAGGUGGUuuUCAACAAc -5'
11174 5' -43.3 NC_002816.1 + 26403 0.66 0.999998
Target:  5'- gGCAGCAUgA-CCACCAGAaaGGUgaUGUa- -3'
miRNA:   3'- -UGUUGUAgUaGGUGGUUU--UCA--ACAac -5'
11174 5' -43.3 NC_002816.1 + 457 0.67 0.999992
Target:  5'- cACGACGUgAUCCGCCAAcAAGa----- -3'
miRNA:   3'- -UGUUGUAgUAGGUGGUU-UUCaacaac -5'
11174 5' -43.3 NC_002816.1 + 62062 0.68 0.999985
Target:  5'- gACAGCGUCGacggUCACCAGGGGUa---- -3'
miRNA:   3'- -UGUUGUAGUa---GGUGGUUUUCAacaac -5'
11174 5' -43.3 NC_002816.1 + 38494 0.68 0.99997
Target:  5'- aGCggUggCGUUgGCCAAGAGUuUGUUGa -3'
miRNA:   3'- -UGuuGuaGUAGgUGGUUUUCA-ACAAC- -5'
11174 5' -43.3 NC_002816.1 + 25664 0.69 0.999864
Target:  5'- uGCGGCAUCGUCa--CAAGAGggGUUu -3'
miRNA:   3'- -UGUUGUAGUAGgugGUUUUCaaCAAc -5'
11174 5' -43.3 NC_002816.1 + 115227 0.72 0.998522
Target:  5'- uACAacACAUCGUCCACCuuGucguacaccAGUUGUa- -3'
miRNA:   3'- -UGU--UGUAGUAGGUGGuuU---------UCAACAac -5'
11174 5' -43.3 NC_002816.1 + 112615 0.74 0.988686
Target:  5'- uGCAACAggcaaUCGUCCGgCA--GGUUGUUGg -3'
miRNA:   3'- -UGUUGU-----AGUAGGUgGUuuUCAACAAC- -5'
11174 5' -43.3 NC_002816.1 + 11730 0.75 0.987016
Target:  5'- cAUggUGUCGUCCACCGuggcAGAGUUGUc- -3'
miRNA:   3'- -UGuuGUAGUAGGUGGU----UUUCAACAac -5'
11174 5' -43.3 NC_002816.1 + 112575 0.69 0.999897
Target:  5'- cACAGCAUUAUCCagcguaguaaACCGAGAGgUGg-- -3'
miRNA:   3'- -UGUUGUAGUAGG----------UGGUUUUCaACaac -5'
11174 5' -43.3 NC_002816.1 + 75916 0.66 0.999997
Target:  5'- aACAACAUCGUcgcCCACCAGAcacaucaAG-UGUa- -3'
miRNA:   3'- -UGUUGUAGUA---GGUGGUUU-------UCaACAac -5'
11174 5' -43.3 NC_002816.1 + 53053 0.66 0.999998
Target:  5'- uCggUGUCAUCCACCAcAGGUg---- -3'
miRNA:   3'- uGuuGUAGUAGGUGGUuUUCAacaac -5'
11174 5' -43.3 NC_002816.1 + 4397 0.66 0.999999
Target:  5'- uGCAACAgCAUCuCAUagAAAAGUUGUUu -3'
miRNA:   3'- -UGUUGUaGUAG-GUGg-UUUUCAACAAc -5'
11174 5' -43.3 NC_002816.1 + 69994 0.66 0.999999
Target:  5'- aACAG-AUCGUCCACCA-GAGUUa--- -3'
miRNA:   3'- -UGUUgUAGUAGGUGGUuUUCAAcaac -5'
11174 5' -43.3 NC_002816.1 + 29580 1.09 0.039497
Target:  5'- cACAACAUCAUCCACCAAAAGUUGUUGc -3'
miRNA:   3'- -UGUUGUAGUAGGUGGUUUUCAACAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.