Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11175 | 3' | -53.7 | NC_002816.1 | + | 5281 | 0.7 | 0.77631 |
Target: 5'- ----gGCAUCACC--UCCACCCC-GCu -3' miRNA: 3'- uguuaCGUAGUGGuuGGGUGGGGaCG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 6448 | 0.66 | 0.935877 |
Target: 5'- gUAAUuCGUCAcacCCGACCaC-CCCCUGCc -3' miRNA: 3'- uGUUAcGUAGU---GGUUGG-GuGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 6608 | 0.67 | 0.886969 |
Target: 5'- -aGAUcCGUCAUCGACCacgCACCCUUGUa -3' miRNA: 3'- ugUUAcGUAGUGGUUGG---GUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 6956 | 0.67 | 0.907215 |
Target: 5'- gGCGAUGCugaCACCGACaaguaCACCUauguacagCUGCu -3' miRNA: 3'- -UGUUACGua-GUGGUUGg----GUGGG--------GACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 8670 | 0.66 | 0.940837 |
Target: 5'- ----cGCcgaCACCAcCCCGCCCUcuUGCa -3' miRNA: 3'- uguuaCGua-GUGGUuGGGUGGGG--ACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 12635 | 0.67 | 0.900716 |
Target: 5'- cACAAUcGCcauuuguucgAUCGCgAGCCCGCCUCcGCc -3' miRNA: 3'- -UGUUA-CG----------UAGUGgUUGGGUGGGGaCG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 24895 | 0.66 | 0.930659 |
Target: 5'- aACAGUGUGUCaACCAgugaaACCCACUUCg-- -3' miRNA: 3'- -UGUUACGUAG-UGGU-----UGGGUGGGGacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 30559 | 1.12 | 0.002062 |
Target: 5'- uACAAUGCAUCACCAACCCACCCCUGCa -3' miRNA: 3'- -UGUUACGUAGUGGUUGGGUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 31695 | 0.69 | 0.822754 |
Target: 5'- aGCAGUGUcUCugGCCAACaCCACCaCCcgGCc -3' miRNA: 3'- -UGUUACGuAG--UGGUUG-GGUGG-GGa-CG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 32035 | 0.67 | 0.886969 |
Target: 5'- -aAAUGCGUCugUucauAGCCCACaacgguCCUUGCa -3' miRNA: 3'- ugUUACGUAGugG----UUGGGUG------GGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 34913 | 0.69 | 0.822754 |
Target: 5'- ----cGCGcCACCAACCCAuCCaCCUGa -3' miRNA: 3'- uguuaCGUaGUGGUUGGGU-GG-GGACg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 35353 | 0.79 | 0.297564 |
Target: 5'- uCGAUGCAacaCACCAACUCACCCgUGUa -3' miRNA: 3'- uGUUACGUa--GUGGUUGGGUGGGgACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 36927 | 0.69 | 0.822754 |
Target: 5'- ----cGuCAUCAcCCAAUCCACCCaUUGCa -3' miRNA: 3'- uguuaC-GUAGU-GGUUGGGUGGG-GACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 36961 | 0.67 | 0.907215 |
Target: 5'- aACuuAUGCAUCACC--UCC-CCUCUGUa -3' miRNA: 3'- -UGu-UACGUAGUGGuuGGGuGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 39506 | 0.66 | 0.935877 |
Target: 5'- gGCAGuUGUuUUuCCGuACCCACCCUUGUc -3' miRNA: 3'- -UGUU-ACGuAGuGGU-UGGGUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 39944 | 0.67 | 0.900716 |
Target: 5'- gGCAAcaccuCAUCGCUAugcugucuACCCGCCaCCUGUa -3' miRNA: 3'- -UGUUac---GUAGUGGU--------UGGGUGG-GGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 53505 | 0.69 | 0.804672 |
Target: 5'- uGCAAUGUGUCACgAACCUACga-UGCa -3' miRNA: 3'- -UGUUACGUAGUGgUUGGGUGgggACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 59407 | 0.74 | 0.517787 |
Target: 5'- aGCAAUGCGUCGCCcugaaaaacaugauuGCCCACUCUacuuuUGCc -3' miRNA: 3'- -UGUUACGUAGUGGu--------------UGGGUGGGG-----ACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 59837 | 0.74 | 0.526964 |
Target: 5'- aACAAUGUguccuGUCACaaaacuCCCACCCCUuGCa -3' miRNA: 3'- -UGUUACG-----UAGUGguu---GGGUGGGGA-CG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 60751 | 0.68 | 0.840088 |
Target: 5'- ----cGCAUCACCca-CCACCCCa-- -3' miRNA: 3'- uguuaCGUAGUGGuugGGUGGGGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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