Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11175 | 3' | -53.7 | NC_002816.1 | + | 35353 | 0.79 | 0.297564 |
Target: 5'- uCGAUGCAacaCACCAACUCACCCgUGUa -3' miRNA: 3'- uGUUACGUa--GUGGUUGGGUGGGgACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 77310 | 0.67 | 0.900052 |
Target: 5'- ----aGCGUcCGCCAcauccacACCCACUCCcGCa -3' miRNA: 3'- uguuaCGUA-GUGGU-------UGGGUGGGGaCG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 36961 | 0.67 | 0.907215 |
Target: 5'- aACuuAUGCAUCACC--UCC-CCUCUGUa -3' miRNA: 3'- -UGu-UACGUAGUGGuuGGGuGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 70391 | 0.67 | 0.907215 |
Target: 5'- cGCGggGCAaaaUCGCCGACUCGCgCCCc-- -3' miRNA: 3'- -UGUuaCGU---AGUGGUUGGGUG-GGGacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 85319 | 0.66 | 0.919451 |
Target: 5'- uGCAGUGCGaCGCCAucuccUCCACCUCg-- -3' miRNA: 3'- -UGUUACGUaGUGGUu----GGGUGGGGacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 24895 | 0.66 | 0.930659 |
Target: 5'- aACAGUGUGUCaACCAgugaaACCCACUUCg-- -3' miRNA: 3'- -UGUUACGUAG-UGGU-----UGGGUGGGGacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 6448 | 0.66 | 0.935877 |
Target: 5'- gUAAUuCGUCAcacCCGACCaC-CCCCUGCc -3' miRNA: 3'- uGUUAcGUAGU---GGUUGG-GuGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 39506 | 0.66 | 0.935877 |
Target: 5'- gGCAGuUGUuUUuCCGuACCCACCCUUGUc -3' miRNA: 3'- -UGUU-ACGuAGuGGU-UGGGUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 96709 | 0.66 | 0.935877 |
Target: 5'- aGCAcuUGCucAUCACCGugucaauacGCUCAUCUCUGCu -3' miRNA: 3'- -UGUu-ACG--UAGUGGU---------UGGGUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 100634 | 0.67 | 0.886969 |
Target: 5'- gGCA--GCAUCGCCcACCUACCCg--- -3' miRNA: 3'- -UGUuaCGUAGUGGuUGGGUGGGgacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 32035 | 0.67 | 0.886969 |
Target: 5'- -aAAUGCGUCugUucauAGCCCACaacgguCCUUGCa -3' miRNA: 3'- ugUUACGUAGugG----UUGGGUG------GGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 6608 | 0.67 | 0.886969 |
Target: 5'- -aGAUcCGUCAUCGACCacgCACCCUUGUa -3' miRNA: 3'- ugUUAcGUAGUGGUUGG---GUGGGGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 59837 | 0.74 | 0.526964 |
Target: 5'- aACAAUGUguccuGUCACaaaacuCCCACCCCUuGCa -3' miRNA: 3'- -UGUUACG-----UAGUGguu---GGGUGGGGA-CG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 109898 | 0.73 | 0.60003 |
Target: 5'- uCAGUGUuuUCACCAcGCCCAgCgCCUGCu -3' miRNA: 3'- uGUUACGu-AGUGGU-UGGGUgG-GGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 60924 | 0.71 | 0.684826 |
Target: 5'- gGCGA-GUGUCG-CAACCCACaaaCCUGCg -3' miRNA: 3'- -UGUUaCGUAGUgGUUGGGUGg--GGACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 68049 | 0.69 | 0.794435 |
Target: 5'- ----cGCAUCACCAccaacaaACCCACCCa--- -3' miRNA: 3'- uguuaCGUAGUGGU-------UGGGUGGGgacg -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 53505 | 0.69 | 0.804672 |
Target: 5'- uGCAAUGUGUCACgAACCUACga-UGCa -3' miRNA: 3'- -UGUUACGUAGUGgUUGGGUGgggACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 36927 | 0.69 | 0.822754 |
Target: 5'- ----cGuCAUCAcCCAAUCCACCCaUUGCa -3' miRNA: 3'- uguuaC-GUAGU-GGUUGGGUGGG-GACG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 31695 | 0.69 | 0.822754 |
Target: 5'- aGCAGUGUcUCugGCCAACaCCACCaCCcgGCc -3' miRNA: 3'- -UGUUACGuAG--UGGUUG-GGUGG-GGa-CG- -5' |
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11175 | 3' | -53.7 | NC_002816.1 | + | 60751 | 0.68 | 0.840088 |
Target: 5'- ----cGCAUCACCca-CCACCCCa-- -3' miRNA: 3'- uguuaCGUAGUGGuugGGUGGGGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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