miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11175 3' -53.7 NC_002816.1 + 84455 0.67 0.879729
Target:  5'- cGguGUGCgAUCGCCccaacgucGAUCUACCCCUGa -3'
miRNA:   3'- -UguUACG-UAGUGG--------UUGGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 99597 0.68 0.875271
Target:  5'- aACAGUGCAcUCGCCAACguuuuuguguagucgUCGCCCuUUGUc -3'
miRNA:   3'- -UGUUACGU-AGUGGUUG---------------GGUGGG-GACG- -5'
11175 3' -53.7 NC_002816.1 + 60751 0.68 0.840088
Target:  5'- ----cGCAUCACCca-CCACCCCa-- -3'
miRNA:   3'- uguuaCGUAGUGGuugGGUGGGGacg -5'
11175 3' -53.7 NC_002816.1 + 34913 0.69 0.822754
Target:  5'- ----cGCGcCACCAACCCAuCCaCCUGa -3'
miRNA:   3'- uguuaCGUaGUGGUUGGGU-GG-GGACg -5'
11175 3' -53.7 NC_002816.1 + 31695 0.69 0.822754
Target:  5'- aGCAGUGUcUCugGCCAACaCCACCaCCcgGCc -3'
miRNA:   3'- -UGUUACGuAG--UGGUUG-GGUGG-GGa-CG- -5'
11175 3' -53.7 NC_002816.1 + 36927 0.69 0.822754
Target:  5'- ----cGuCAUCAcCCAAUCCACCCaUUGCa -3'
miRNA:   3'- uguuaC-GUAGU-GGUUGGGUGGG-GACG- -5'
11175 3' -53.7 NC_002816.1 + 53505 0.69 0.804672
Target:  5'- uGCAAUGUGUCACgAACCUACga-UGCa -3'
miRNA:   3'- -UGUUACGUAGUGgUUGGGUGgggACG- -5'
11175 3' -53.7 NC_002816.1 + 68049 0.69 0.794435
Target:  5'- ----cGCAUCACCAccaacaaACCCACCCa--- -3'
miRNA:   3'- uguuaCGUAGUGGU-------UGGGUGGGgacg -5'
11175 3' -53.7 NC_002816.1 + 5281 0.7 0.77631
Target:  5'- ----gGCAUCACC--UCCACCCC-GCu -3'
miRNA:   3'- uguuaCGUAGUGGuuGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 60924 0.71 0.684826
Target:  5'- gGCGA-GUGUCG-CAACCCACaaaCCUGCg -3'
miRNA:   3'- -UGUUaCGUAGUgGUUGGGUGg--GGACG- -5'
11175 3' -53.7 NC_002816.1 + 109898 0.73 0.60003
Target:  5'- uCAGUGUuuUCACCAcGCCCAgCgCCUGCu -3'
miRNA:   3'- uGUUACGu-AGUGGU-UGGGUgG-GGACG- -5'
11175 3' -53.7 NC_002816.1 + 59837 0.74 0.526964
Target:  5'- aACAAUGUguccuGUCACaaaacuCCCACCCCUuGCa -3'
miRNA:   3'- -UGUUACG-----UAGUGguu---GGGUGGGGA-CG- -5'
11175 3' -53.7 NC_002816.1 + 59407 0.74 0.517787
Target:  5'- aGCAAUGCGUCGCCcugaaaaacaugauuGCCCACUCUacuuuUGCc -3'
miRNA:   3'- -UGUUACGUAGUGGu--------------UGGGUGGGG-----ACG- -5'
11175 3' -53.7 NC_002816.1 + 35353 0.79 0.297564
Target:  5'- uCGAUGCAacaCACCAACUCACCCgUGUa -3'
miRNA:   3'- uGUUACGUa--GUGGUUGGGUGGGgACG- -5'
11175 3' -53.7 NC_002816.1 + 30559 1.12 0.002062
Target:  5'- uACAAUGCAUCACCAACCCACCCCUGCa -3'
miRNA:   3'- -UGUUACGUAGUGGUUGGGUGGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.