miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11175 5' -53.5 NC_002816.1 + 61760 0.66 0.952203
Target:  5'- gUGCGCUGAGCuugacgCCGUugauGAC-CACa- -3'
miRNA:   3'- gACGUGACUCGua----GGCA----CUGuGUGcc -5'
11175 5' -53.5 NC_002816.1 + 32876 0.66 0.947931
Target:  5'- aCUGUAgccgaUGAGCGa--GUGGCACAUGGu -3'
miRNA:   3'- -GACGUg----ACUCGUaggCACUGUGUGCC- -5'
11175 5' -53.5 NC_002816.1 + 34365 0.66 0.943413
Target:  5'- -gGCACUGGGUGaaUGUGAacggcaACACGGc -3'
miRNA:   3'- gaCGUGACUCGUagGCACUg-----UGUGCC- -5'
11175 5' -53.5 NC_002816.1 + 30888 0.67 0.933632
Target:  5'- gUGCgGCUGAuGCGUUgGguauGCACACGGg -3'
miRNA:   3'- gACG-UGACU-CGUAGgCac--UGUGUGCC- -5'
11175 5' -53.5 NC_002816.1 + 44770 0.68 0.904783
Target:  5'- --aCACUGAGCAUCCaa---ACGCGGa -3'
miRNA:   3'- gacGUGACUCGUAGGcacugUGUGCC- -5'
11175 5' -53.5 NC_002816.1 + 77627 0.69 0.861326
Target:  5'- gUGCACUGAGCcaccagaacaaucGUCCGguGCACGCc- -3'
miRNA:   3'- gACGUGACUCG-------------UAGGCacUGUGUGcc -5'
11175 5' -53.5 NC_002816.1 + 19378 0.73 0.63151
Target:  5'- uUGCGCUcGGcCGUCUG-GACGCGCGGu -3'
miRNA:   3'- gACGUGAcUC-GUAGGCaCUGUGUGCC- -5'
11175 5' -53.5 NC_002816.1 + 30525 1.11 0.002858
Target:  5'- cCUGCACUGAGCAUCCGUGACACACGGa -3'
miRNA:   3'- -GACGUGACUCGUAGGCACUGUGUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.