Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11176 | 5' | -50.9 | NC_002816.1 | + | 122422 | 0.73 | 0.818159 |
Target: 5'- aGGUGAUguuCGCucuGGUgGGCCugGCGCa -3' miRNA: 3'- -CCACUGu--GUGcu-UUAaCCGGugCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 80749 | 0.66 | 0.992045 |
Target: 5'- uGGUGuCGCucaucgauuCGGAcgUGGCgcccauaaaACGCGCa -3' miRNA: 3'- -CCACuGUGu--------GCUUuaACCGg--------UGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 54117 | 0.66 | 0.988107 |
Target: 5'- uGGUGAU-CugGAccgUGGUCGCG-GCg -3' miRNA: 3'- -CCACUGuGugCUuuaACCGGUGCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 96363 | 0.66 | 0.988107 |
Target: 5'- uGUGACACACcAAAuUUGGUgGCGUa- -3' miRNA: 3'- cCACUGUGUGcUUU-AACCGgUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 19541 | 0.66 | 0.986503 |
Target: 5'- cGUGGCgACACGAGGU-GGaCACGaagcaGCa -3' miRNA: 3'- cCACUG-UGUGCUUUAaCCgGUGCg----CG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 36621 | 0.66 | 0.984739 |
Target: 5'- uGGUGACcucagACAgcCGcAAGUUGGUCGCGUccaGCu -3' miRNA: 3'- -CCACUG-----UGU--GC-UUUAACCGGUGCG---CG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 66754 | 0.67 | 0.978388 |
Target: 5'- aGUGuGCugGCaAAGUUGGCgccaaaaACGCGCa -3' miRNA: 3'- cCAC-UGugUGcUUUAACCGg------UGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 46536 | 0.67 | 0.975889 |
Target: 5'- uGGUGugcucauuaauAUACACGG---UGGCCACGUa- -3' miRNA: 3'- -CCAC-----------UGUGUGCUuuaACCGGUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 67728 | 0.67 | 0.973184 |
Target: 5'- uGGUGACAaguuUGAGuuGUUGGUgGCGCa- -3' miRNA: 3'- -CCACUGUgu--GCUU--UAACCGgUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 122854 | 0.69 | 0.9334 |
Target: 5'- uGUGGCGgAgGAAAgugUGGCCcaccUGCGCa -3' miRNA: 3'- cCACUGUgUgCUUUa--ACCGGu---GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 107661 | 0.7 | 0.916564 |
Target: 5'- uGGUGGCGCugaGGAaucAUUGGCgGgaGCGCg -3' miRNA: 3'- -CCACUGUGug-CUU---UAACCGgUg-CGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 49152 | 0.71 | 0.897413 |
Target: 5'- aGGUGA-GCGCcAAGUUGGCCAgguuCGcCGCg -3' miRNA: 3'- -CCACUgUGUGcUUUAACCGGU----GC-GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 119002 | 0.71 | 0.897413 |
Target: 5'- aGGUGAUugA-GAGugUGGgCACGUGCa -3' miRNA: 3'- -CCACUGugUgCUUuaACCgGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 109324 | 0.72 | 0.827041 |
Target: 5'- aGUGAgCAUACu--GUUGGCCAuacCGCGCa -3' miRNA: 3'- cCACU-GUGUGcuuUAACCGGU---GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 27661 | 0.67 | 0.982804 |
Target: 5'- uGGUGAUAauaGAAGUggUGGCCAgG-GCa -3' miRNA: 3'- -CCACUGUgugCUUUA--ACCGGUgCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 121669 | 0.66 | 0.986503 |
Target: 5'- aGGuUGGCGCACGAAuggaagaaAUUGGagaGgGUGCa -3' miRNA: 3'- -CC-ACUGUGUGCUU--------UAACCgg-UgCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 57322 | 0.66 | 0.988705 |
Target: 5'- uGGUGAUACGCGuguacggagacaguAggUGGaCCAC-CGCc -3' miRNA: 3'- -CCACUGUGUGCu-------------UuaACC-GGUGcGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 79113 | 0.66 | 0.989559 |
Target: 5'- aGGUG-CGCGuCGAuccguuGUUGGCCACcaccuUGCa -3' miRNA: 3'- -CCACuGUGU-GCUu-----UAACCGGUGc----GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 3860 | 0.66 | 0.990868 |
Target: 5'- cGGUGGCACACccucgcGGCgAUGUGg -3' miRNA: 3'- -CCACUGUGUGcuuuaaCCGgUGCGCg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 37788 | 1.15 | 0.003467 |
Target: 5'- uGGUGACACACGAAAUUGGCCACGCGCu -3' miRNA: 3'- -CCACUGUGUGCUUUAACCGGUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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