miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11176 5' -50.9 NC_002816.1 + 122422 0.73 0.818159
Target:  5'- aGGUGAUguuCGCucuGGUgGGCCugGCGCa -3'
miRNA:   3'- -CCACUGu--GUGcu-UUAaCCGGugCGCG- -5'
11176 5' -50.9 NC_002816.1 + 80749 0.66 0.992045
Target:  5'- uGGUGuCGCucaucgauuCGGAcgUGGCgcccauaaaACGCGCa -3'
miRNA:   3'- -CCACuGUGu--------GCUUuaACCGg--------UGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 54117 0.66 0.988107
Target:  5'- uGGUGAU-CugGAccgUGGUCGCG-GCg -3'
miRNA:   3'- -CCACUGuGugCUuuaACCGGUGCgCG- -5'
11176 5' -50.9 NC_002816.1 + 96363 0.66 0.988107
Target:  5'- uGUGACACACcAAAuUUGGUgGCGUa- -3'
miRNA:   3'- cCACUGUGUGcUUU-AACCGgUGCGcg -5'
11176 5' -50.9 NC_002816.1 + 19541 0.66 0.986503
Target:  5'- cGUGGCgACACGAGGU-GGaCACGaagcaGCa -3'
miRNA:   3'- cCACUG-UGUGCUUUAaCCgGUGCg----CG- -5'
11176 5' -50.9 NC_002816.1 + 36621 0.66 0.984739
Target:  5'- uGGUGACcucagACAgcCGcAAGUUGGUCGCGUccaGCu -3'
miRNA:   3'- -CCACUG-----UGU--GC-UUUAACCGGUGCG---CG- -5'
11176 5' -50.9 NC_002816.1 + 66754 0.67 0.978388
Target:  5'- aGUGuGCugGCaAAGUUGGCgccaaaaACGCGCa -3'
miRNA:   3'- cCAC-UGugUGcUUUAACCGg------UGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 46536 0.67 0.975889
Target:  5'- uGGUGugcucauuaauAUACACGG---UGGCCACGUa- -3'
miRNA:   3'- -CCAC-----------UGUGUGCUuuaACCGGUGCGcg -5'
11176 5' -50.9 NC_002816.1 + 67728 0.67 0.973184
Target:  5'- uGGUGACAaguuUGAGuuGUUGGUgGCGCa- -3'
miRNA:   3'- -CCACUGUgu--GCUU--UAACCGgUGCGcg -5'
11176 5' -50.9 NC_002816.1 + 122854 0.69 0.9334
Target:  5'- uGUGGCGgAgGAAAgugUGGCCcaccUGCGCa -3'
miRNA:   3'- cCACUGUgUgCUUUa--ACCGGu---GCGCG- -5'
11176 5' -50.9 NC_002816.1 + 107661 0.7 0.916564
Target:  5'- uGGUGGCGCugaGGAaucAUUGGCgGgaGCGCg -3'
miRNA:   3'- -CCACUGUGug-CUU---UAACCGgUg-CGCG- -5'
11176 5' -50.9 NC_002816.1 + 49152 0.71 0.897413
Target:  5'- aGGUGA-GCGCcAAGUUGGCCAgguuCGcCGCg -3'
miRNA:   3'- -CCACUgUGUGcUUUAACCGGU----GC-GCG- -5'
11176 5' -50.9 NC_002816.1 + 119002 0.71 0.897413
Target:  5'- aGGUGAUugA-GAGugUGGgCACGUGCa -3'
miRNA:   3'- -CCACUGugUgCUUuaACCgGUGCGCG- -5'
11176 5' -50.9 NC_002816.1 + 109324 0.72 0.827041
Target:  5'- aGUGAgCAUACu--GUUGGCCAuacCGCGCa -3'
miRNA:   3'- cCACU-GUGUGcuuUAACCGGU---GCGCG- -5'
11176 5' -50.9 NC_002816.1 + 27661 0.67 0.982804
Target:  5'- uGGUGAUAauaGAAGUggUGGCCAgG-GCa -3'
miRNA:   3'- -CCACUGUgugCUUUA--ACCGGUgCgCG- -5'
11176 5' -50.9 NC_002816.1 + 121669 0.66 0.986503
Target:  5'- aGGuUGGCGCACGAAuggaagaaAUUGGagaGgGUGCa -3'
miRNA:   3'- -CC-ACUGUGUGCUU--------UAACCgg-UgCGCG- -5'
11176 5' -50.9 NC_002816.1 + 57322 0.66 0.988705
Target:  5'- uGGUGAUACGCGuguacggagacaguAggUGGaCCAC-CGCc -3'
miRNA:   3'- -CCACUGUGUGCu-------------UuaACC-GGUGcGCG- -5'
11176 5' -50.9 NC_002816.1 + 79113 0.66 0.989559
Target:  5'- aGGUG-CGCGuCGAuccguuGUUGGCCACcaccuUGCa -3'
miRNA:   3'- -CCACuGUGU-GCUu-----UAACCGGUGc----GCG- -5'
11176 5' -50.9 NC_002816.1 + 3860 0.66 0.990868
Target:  5'- cGGUGGCACACccucgcGGCgAUGUGg -3'
miRNA:   3'- -CCACUGUGUGcuuuaaCCGgUGCGCg -5'
11176 5' -50.9 NC_002816.1 + 37788 1.15 0.003467
Target:  5'- uGGUGACACACGAAAUUGGCCACGCGCu -3'
miRNA:   3'- -CCACUGUGUGCUUUAACCGGUGCGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.