Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11177 | 3' | -49.3 | NC_002816.1 | + | 6225 | 0.73 | 0.864123 |
Target: 5'- ---gCACAUACUCUCCCuUCGccAGCACa -3' miRNA: 3'- guuaGUGUGUGAGGGGGuAGU--UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 7582 | 0.69 | 0.959859 |
Target: 5'- aAAUgCACACugUCUCCC--CGAGCACc -3' miRNA: 3'- gUUA-GUGUGugAGGGGGuaGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 8203 | 0.72 | 0.894462 |
Target: 5'- uGAUgGCACGCU-CCUCGUCcGACACg -3' miRNA: 3'- gUUAgUGUGUGAgGGGGUAGuUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 10662 | 0.66 | 0.992402 |
Target: 5'- ---aCACGCGuCUCgCCCCAaaGAACAUg -3' miRNA: 3'- guuaGUGUGU-GAG-GGGGUagUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 14500 | 0.67 | 0.989924 |
Target: 5'- --cUCGCACAaaaCCCCCGUCuGGC-Cg -3' miRNA: 3'- guuAGUGUGUga-GGGGGUAGuUUGuG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 23336 | 0.68 | 0.980959 |
Target: 5'- cCAAUCACcCGCUacaCCCAUUAAucaACGCa -3' miRNA: 3'- -GUUAGUGuGUGAgg-GGGUAGUU---UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 26390 | 0.73 | 0.864123 |
Target: 5'- --uUUGCACACUCCCCCcacAUCAcacuguggcaacGGCACc -3' miRNA: 3'- guuAGUGUGUGAGGGGG---UAGU------------UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 31576 | 0.67 | 0.98507 |
Target: 5'- ----gGCACACUCaaCCCCGUgaUAGGCACc -3' miRNA: 3'- guuagUGUGUGAG--GGGGUA--GUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 36857 | 0.67 | 0.988468 |
Target: 5'- gCAAUCACACGCaaccCUCCCAccCAAuuCACa -3' miRNA: 3'- -GUUAGUGUGUGa---GGGGGUa-GUUu-GUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 37838 | 0.69 | 0.970283 |
Target: 5'- -uGUCGCcguGCUCCCCUcucgCAAACACa -3' miRNA: 3'- guUAGUGug-UGAGGGGGua--GUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 37885 | 0.74 | 0.811605 |
Target: 5'- --cUCACAUugUCCCCCAccucgCAAaaccGCACa -3' miRNA: 3'- guuAGUGUGugAGGGGGUa----GUU----UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 40212 | 1.12 | 0.006325 |
Target: 5'- aCAAUCACACACUCCCCCAUCAAACACg -3' miRNA: 3'- -GUUAGUGUGUGAGGGGGUAGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 43539 | 0.72 | 0.894462 |
Target: 5'- cCAGUCACACAa-CCaCCCAUUucuGCGCg -3' miRNA: 3'- -GUUAGUGUGUgaGG-GGGUAGuu-UGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 45943 | 0.66 | 0.995904 |
Target: 5'- gAAUCGCccgccaACUCaCCCuUCAAACACa -3' miRNA: 3'- gUUAGUGug----UGAGgGGGuAGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 49636 | 0.68 | 0.980959 |
Target: 5'- -uAUCAuCAU-CUCCUCCAUCAAAcCGCg -3' miRNA: 3'- guUAGU-GUGuGAGGGGGUAGUUU-GUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 60877 | 0.69 | 0.970283 |
Target: 5'- cUAAUCACGCGCgcaCCUCCAaCAA-CACc -3' miRNA: 3'- -GUUAGUGUGUGa--GGGGGUaGUUuGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 78231 | 0.7 | 0.945753 |
Target: 5'- --cUCAU-CACUCCCCCAUCGuagauucuugugcgAACAUc -3' miRNA: 3'- guuAGUGuGUGAGGGGGUAGU--------------UUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 80113 | 0.66 | 0.99437 |
Target: 5'- -uGUCACACuACUCa-CCAuauuuUCAAACGCg -3' miRNA: 3'- guUAGUGUG-UGAGggGGU-----AGUUUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 82953 | 0.68 | 0.980959 |
Target: 5'- uGAUCuACAaacuCUCCCCCuUCGcACACa -3' miRNA: 3'- gUUAG-UGUgu--GAGGGGGuAGUuUGUG- -5' |
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11177 | 3' | -49.3 | NC_002816.1 | + | 83178 | 0.67 | 0.989924 |
Target: 5'- aAAUCuGCGCGCUCCUCCAcCAc-CACc -3' miRNA: 3'- gUUAG-UGUGUGAGGGGGUaGUuuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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