miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11178 3' -51.8 NC_002816.1 + 49331 1.09 0.006189
Target:  5'- aAGCCACCGUGAAAACGGUCAAAGCCGc -3'
miRNA:   3'- -UCGGUGGCACUUUUGCCAGUUUCGGC- -5'
11178 3' -51.8 NC_002816.1 + 60313 0.72 0.78547
Target:  5'- aGGCCGCCGUGucguGACGGauuUCugcccGCCGa -3'
miRNA:   3'- -UCGGUGGCACuu--UUGCC---AGuuu--CGGC- -5'
11178 3' -51.8 NC_002816.1 + 29492 0.71 0.822494
Target:  5'- uGGCCACgCGU-AAAGUGGUCGucGCCGa -3'
miRNA:   3'- -UCGGUG-GCAcUUUUGCCAGUuuCGGC- -5'
11178 3' -51.8 NC_002816.1 + 13720 0.67 0.950228
Target:  5'- cGCCACCacGUGAccgcACGGUaCGAAGCa- -3'
miRNA:   3'- uCGGUGG--CACUuu--UGCCA-GUUUCGgc -5'
11178 3' -51.8 NC_002816.1 + 60208 0.67 0.954436
Target:  5'- uGUCugUGUGAAAAUGGUUuuguGCCc -3'
miRNA:   3'- uCGGugGCACUUUUGCCAGuuu-CGGc -5'
11178 3' -51.8 NC_002816.1 + 93965 0.67 0.954436
Target:  5'- gAGcCCGCCGUGAAAGCcaUCAAAuuGUCGc -3'
miRNA:   3'- -UC-GGUGGCACUUUUGccAGUUU--CGGC- -5'
11178 3' -51.8 NC_002816.1 + 71270 0.67 0.962115
Target:  5'- gAGUaCAUgGUGAAGACGGagAcgauAAGCCGg -3'
miRNA:   3'- -UCG-GUGgCACUUUUGCCagU----UUCGGC- -5'
11178 3' -51.8 NC_002816.1 + 32013 0.67 0.965595
Target:  5'- cGGCCAUCGUGAAAacaaacaacACGGgc---GCCa -3'
miRNA:   3'- -UCGGUGGCACUUU---------UGCCaguuuCGGc -5'
11178 3' -51.8 NC_002816.1 + 54317 0.66 0.977274
Target:  5'- cGCCGCCGUGucagcccacaGAGACGaaGUCAcAGCa- -3'
miRNA:   3'- uCGGUGGCAC----------UUUUGC--CAGUuUCGgc -5'
11178 3' -51.8 NC_002816.1 + 122204 0.66 0.981873
Target:  5'- uGCgGCgGUGggGAgGGUCAaacaacacGAGUCa -3'
miRNA:   3'- uCGgUGgCACuuUUgCCAGU--------UUCGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.