miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11179 5' -50.2 NC_002816.1 + 77629 0.66 0.991944
Target:  5'- uCGUGCAcuGa-GCCACCAgaacaaucguccggUGCACGCc -3'
miRNA:   3'- uGUAUGUuuCgcCGGUGGU--------------AUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 9572 0.66 0.99111
Target:  5'- cACAUACAccucaAAGUaGCCAgguUCGUGCACGg -3'
miRNA:   3'- -UGUAUGU-----UUCGcCGGU---GGUAUGUGCg -5'
11179 5' -50.2 NC_002816.1 + 98989 0.66 0.988946
Target:  5'- -gGUGCcAAGUGcGCCAUCGcccgacgaccaccacUACGCGCu -3'
miRNA:   3'- ugUAUGuUUCGC-CGGUGGU---------------AUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 67995 0.66 0.986735
Target:  5'- cCAUACGGuugaugucgcAGuUGGCCuCUAUGCugGCg -3'
miRNA:   3'- uGUAUGUU----------UC-GCCGGuGGUAUGugCG- -5'
11179 5' -50.2 NC_002816.1 + 55760 0.66 0.986735
Target:  5'- gACA-ACAAGGCGGUgAUUuUGCAgGCg -3'
miRNA:   3'- -UGUaUGUUUCGCCGgUGGuAUGUgCG- -5'
11179 5' -50.2 NC_002816.1 + 36664 0.66 0.986735
Target:  5'- --uUugAGGGCGuucauuGCCACCuuGUACACGUc -3'
miRNA:   3'- uguAugUUUCGC------CGGUGG--UAUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 108573 0.67 0.983006
Target:  5'- cUAUGgauGGGCGGUgACCAUACauaaaGCGCa -3'
miRNA:   3'- uGUAUgu-UUCGCCGgUGGUAUG-----UGCG- -5'
11179 5' -50.2 NC_002816.1 + 87548 0.67 0.975998
Target:  5'- cGCAUGCA----GGCCACUAucaauuauUAUACGCg -3'
miRNA:   3'- -UGUAUGUuucgCCGGUGGU--------AUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 116577 0.68 0.970278
Target:  5'- cACGUAuuauCAAcucGGCGGCCGCUuUACACu- -3'
miRNA:   3'- -UGUAU----GUU---UCGCCGGUGGuAUGUGcg -5'
11179 5' -50.2 NC_002816.1 + 98118 0.69 0.956036
Target:  5'- ---aGgGAGGCGGCCACCAcaaaAUugGUc -3'
miRNA:   3'- uguaUgUUUCGCCGGUGGUa---UGugCG- -5'
11179 5' -50.2 NC_002816.1 + 101457 0.69 0.946955
Target:  5'- gGCGUAUGAAccgaacucggcacGCGGCUGaauaUAUACACGCg -3'
miRNA:   3'- -UGUAUGUUU-------------CGCCGGUg---GUAUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 17126 0.69 0.937743
Target:  5'- cGCGUACAuuGCGGaCCcuACCgcGUGCAgCGCc -3'
miRNA:   3'- -UGUAUGUuuCGCC-GG--UGG--UAUGU-GCG- -5'
11179 5' -50.2 NC_002816.1 + 116423 0.71 0.902307
Target:  5'- -aGUGUAAAGCGGCCGCCGaguugauaAUACGUg -3'
miRNA:   3'- ugUAUGUUUCGCCGGUGGUa-------UGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 57144 0.71 0.89547
Target:  5'- gUAUGCAGaagugucggcGGUGGuCCACCuacugucuccGUACACGCg -3'
miRNA:   3'- uGUAUGUU----------UCGCC-GGUGG----------UAUGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 46261 0.71 0.888375
Target:  5'- -aAUACGAaaguguGGCGGUCACCA-ACGCGg -3'
miRNA:   3'- ugUAUGUU------UCGCCGGUGGUaUGUGCg -5'
11179 5' -50.2 NC_002816.1 + 25862 0.72 0.857509
Target:  5'- uGCAUAguGAGCuggacGCCGCCGUAaauuguCACGCg -3'
miRNA:   3'- -UGUAUguUUCGc----CGGUGGUAU------GUGCG- -5'
11179 5' -50.2 NC_002816.1 + 70481 0.73 0.785344
Target:  5'- cACAaAC-AGGCGGUCGCCGU-CACGUu -3'
miRNA:   3'- -UGUaUGuUUCGCCGGUGGUAuGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 78952 0.73 0.785344
Target:  5'- -uGUGCAAGGUGGUgGCCAacaacggaucgACGCGCa -3'
miRNA:   3'- ugUAUGUUUCGCCGgUGGUa----------UGUGCG- -5'
11179 5' -50.2 NC_002816.1 + 110274 0.75 0.724458
Target:  5'- cACGUACA---CGGCCACCcuagAUugGCGCa -3'
miRNA:   3'- -UGUAUGUuucGCCGGUGG----UAugUGCG- -5'
11179 5' -50.2 NC_002816.1 + 87701 0.75 0.713934
Target:  5'- cGCGUAUAAuaauugauAGUGGCCugCAUGCGCu- -3'
miRNA:   3'- -UGUAUGUU--------UCGCCGGugGUAUGUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.