miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11180 5' -49 NC_002816.1 + 48128 0.66 0.996366
Target:  5'- aAGUUGUaCaacACACCCAAUACAcGCAu -3'
miRNA:   3'- cUCAACGcGa--UGUGGGUUGUGUuUGU- -5'
11180 5' -49 NC_002816.1 + 91354 0.66 0.99314
Target:  5'- aGGGgcGCGCgaaACCCAcucaauugaucaACGCGGACGa -3'
miRNA:   3'- -CUCaaCGCGaugUGGGU------------UGUGUUUGU- -5'
11180 5' -49 NC_002816.1 + 107385 0.67 0.992052
Target:  5'- --uUUGUGCU-CACCCAACACc---- -3'
miRNA:   3'- cucAACGCGAuGUGGGUUGUGuuugu -5'
11180 5' -49 NC_002816.1 + 41201 0.67 0.991936
Target:  5'- -uGggGUGCUacggaauACGCCCAACGcCGAGCu -3'
miRNA:   3'- cuCaaCGCGA-------UGUGGGUUGU-GUUUGu -5'
11180 5' -49 NC_002816.1 + 75135 0.67 0.990831
Target:  5'- uGAGUUGUuuaGUUGCGCcgCCAACAUAGugGu -3'
miRNA:   3'- -CUCAACG---CGAUGUG--GGUUGUGUUugU- -5'
11180 5' -49 NC_002816.1 + 53699 0.67 0.986269
Target:  5'- ---gUGCGC-ACACCCGACggcgcucuuuauACGGGCAu -3'
miRNA:   3'- cucaACGCGaUGUGGGUUG------------UGUUUGU- -5'
11180 5' -49 NC_002816.1 + 108789 0.67 0.986269
Target:  5'- -----aCGCUugACCCggUGCAAACAa -3'
miRNA:   3'- cucaacGCGAugUGGGuuGUGUUUGU- -5'
11180 5' -49 NC_002816.1 + 105243 0.68 0.982374
Target:  5'- cGGGUUGC-CUACACCguucacauugaAACACGGACc -3'
miRNA:   3'- -CUCAACGcGAUGUGGg----------UUGUGUUUGu -5'
11180 5' -49 NC_002816.1 + 6918 0.68 0.980139
Target:  5'- ----cGCGC-ACGCUCuGCACAAACAc -3'
miRNA:   3'- cucaaCGCGaUGUGGGuUGUGUUUGU- -5'
11180 5' -49 NC_002816.1 + 82833 0.68 0.9777
Target:  5'- aAGUUGCGCUGCGCCaaau-CAAAg- -3'
miRNA:   3'- cUCAACGCGAUGUGGguuguGUUUgu -5'
11180 5' -49 NC_002816.1 + 109932 0.68 0.9777
Target:  5'- ----cGCGUucugugaagauUACACCCAACACuGGCAc -3'
miRNA:   3'- cucaaCGCG-----------AUGUGGGUUGUGuUUGU- -5'
11180 5' -49 NC_002816.1 + 91177 0.68 0.975047
Target:  5'- ---aUGUGCUAUAcCCCAACAUAAAg- -3'
miRNA:   3'- cucaACGCGAUGU-GGGUUGUGUUUgu -5'
11180 5' -49 NC_002816.1 + 60015 0.69 0.962123
Target:  5'- aAGUgcGCGCaGCuguaauCCCAACACGGGCAc -3'
miRNA:   3'- cUCAa-CGCGaUGu-----GGGUUGUGUUUGU- -5'
11180 5' -49 NC_002816.1 + 119603 0.7 0.94024
Target:  5'- ----aGCGCUcGCGCCCAAcCACAAAUu -3'
miRNA:   3'- cucaaCGCGA-UGUGGGUU-GUGUUUGu -5'
11180 5' -49 NC_002816.1 + 95491 0.71 0.929584
Target:  5'- aGGUUGCGCUACAgaCCAcCAUuAAACAa -3'
miRNA:   3'- cUCAACGCGAUGUg-GGUuGUG-UUUGU- -5'
11180 5' -49 NC_002816.1 + 65784 0.71 0.917817
Target:  5'- gGAGUuuUGCGaggaaugUGCGCCCAaACACAAACu -3'
miRNA:   3'- -CUCA--ACGCg------AUGUGGGU-UGUGUUUGu -5'
11180 5' -49 NC_002816.1 + 8508 0.73 0.868069
Target:  5'- ----gGUGCUGaaaGCCCAACACGAGCc -3'
miRNA:   3'- cucaaCGCGAUg--UGGGUUGUGUUUGu -5'
11180 5' -49 NC_002816.1 + 84634 0.73 0.842942
Target:  5'- gGAGUUGUGau-CACCCAcuguGCGCAGAUAu -3'
miRNA:   3'- -CUCAACGCgauGUGGGU----UGUGUUUGU- -5'
11180 5' -49 NC_002816.1 + 50334 1.1 0.008079
Target:  5'- cGAGUUGCGCUACACCCAACACAAACAg -3'
miRNA:   3'- -CUCAACGCGAUGUGGGUUGUGUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.