miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 45883 0.66 0.999974
Target:  5'- ----gGACACUGua-CCGGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGGUugcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 117263 0.66 0.999974
Target:  5'- gCUUUgacgGACaaACCAugGCCGACAuUGuGUa -3'
miRNA:   3'- -GAAAa---UUG--UGGUugCGGUUGUuGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 93127 0.66 0.999981
Target:  5'- ----cGACACCAuacuCGacuACAACGGUg -3'
miRNA:   3'- gaaaaUUGUGGUu---GCgguUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 117534 0.66 0.999981
Target:  5'- --aUUGGCGCacauGC-CCGGCGACGaGCg -3'
miRNA:   3'- gaaAAUUGUGgu--UGcGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 39606 0.66 0.999981
Target:  5'- -------uGCCAGCGCac-CGugGGCa -3'
miRNA:   3'- gaaaauugUGGUUGCGguuGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 21495 0.66 0.999934
Target:  5'- ------uCACCGAUGCCAuACAGCGu- -3'
miRNA:   3'- gaaaauuGUGGUUGCGGU-UGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 73538 0.66 0.999934
Target:  5'- -gUUgcACACCAACGCCuuaAACGu- -3'
miRNA:   3'- gaAAauUGUGGUUGCGGuugUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 109885 0.66 0.999934
Target:  5'- --aUUuGCGCCAAUGCCAAauacCGGa -3'
miRNA:   3'- gaaAAuUGUGGUUGCGGUUguu-GCCg -5'
11182 5' -45.4 NC_002816.1 + 65186 0.68 0.999671
Target:  5'- ---aUAACAUCAACaCCAACAACa-- -3'
miRNA:   3'- gaaaAUUGUGGUUGcGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 91510 0.68 0.999671
Target:  5'- ----aAACACuCAACGaaaCCAAgAACGGUg -3'
miRNA:   3'- gaaaaUUGUG-GUUGC---GGUUgUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 75953 0.68 0.999671
Target:  5'- ---cUGACACCGcuugcGCGUCgAAUAACuGGCg -3'
miRNA:   3'- gaaaAUUGUGGU-----UGCGG-UUGUUG-CCG- -5'
11182 5' -45.4 NC_002816.1 + 122481 0.68 0.999671
Target:  5'- ----aAACugUAAcCGCCcguACAACGGUg -3'
miRNA:   3'- gaaaaUUGugGUU-GCGGu--UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 87525 0.68 0.999743
Target:  5'- -----uACACCAccuUGCuCAACAACGaGCg -3'
miRNA:   3'- gaaaauUGUGGUu--GCG-GUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 121770 0.67 0.999801
Target:  5'- aUUUUGACACCAuggGCGCUGuacACAAuccauUGGUg -3'
miRNA:   3'- gAAAAUUGUGGU---UGCGGU---UGUU-----GCCG- -5'
11182 5' -45.4 NC_002816.1 + 5356 0.67 0.999847
Target:  5'- --aUUggUGCguGCGUCAACAcauuCGGCa -3'
miRNA:   3'- gaaAAuuGUGguUGCGGUUGUu---GCCG- -5'
11182 5' -45.4 NC_002816.1 + 109524 0.67 0.999847
Target:  5'- ---gUGACGCCGuCGCUGACgcuacaGugGGCc -3'
miRNA:   3'- gaaaAUUGUGGUuGCGGUUG------UugCCG- -5'
11182 5' -45.4 NC_002816.1 + 38233 0.67 0.999883
Target:  5'- ----cAGCACCAAU-UCGACGugGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 103632 0.67 0.999883
Target:  5'- ----aAACACauACGUCAACAaaACGGUg -3'
miRNA:   3'- gaaaaUUGUGguUGCGGUUGU--UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 36460 0.67 0.999883
Target:  5'- ----cAACACCcuggauGAUGUCAuauGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGG------UUGCGGU---UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 10369 0.67 0.999912
Target:  5'- ----gGGCuCgGGCGCCAACAacACGcGCa -3'
miRNA:   3'- gaaaaUUGuGgUUGCGGUUGU--UGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.