miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 111415 0.72 0.990374
Target:  5'- -----cACGCCAACuCCAGCAuACGGUu -3'
miRNA:   3'- gaaaauUGUGGUUGcGGUUGU-UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 90617 0.69 0.99875
Target:  5'- -aUUUGucGCugCAcgACGCCGA-AACGGCu -3'
miRNA:   3'- gaAAAU--UGugGU--UGCGGUUgUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 5356 0.67 0.999847
Target:  5'- --aUUggUGCguGCGUCAACAcauuCGGCa -3'
miRNA:   3'- gaaAAuuGUGguUGCGGUUGUu---GCCG- -5'
11182 5' -45.4 NC_002816.1 + 61828 0.71 0.995504
Target:  5'- ----cGACACCAuCGagagaCAGCAcaGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGUuGCg----GUUGU--UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 109524 0.67 0.999847
Target:  5'- ---gUGACGCCGuCGCUGACgcuacaGugGGCc -3'
miRNA:   3'- gaaaAUUGUGGUuGCGGUUG------UugCCG- -5'
11182 5' -45.4 NC_002816.1 + 111290 0.78 0.854075
Target:  5'- --cUUAucauCACCAAuCGCCAGC-ACGGCa -3'
miRNA:   3'- gaaAAUu---GUGGUU-GCGGUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 87525 0.68 0.999743
Target:  5'- -----uACACCAccuUGCuCAACAACGaGCg -3'
miRNA:   3'- gaaaauUGUGGUu--GCG-GUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 31775 0.78 0.870643
Target:  5'- ----cAACGgCAACaCCAGCGACGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 83538 0.76 0.931983
Target:  5'- gUUUUGACACgGGCGCCAguguguGCGAagggGGCa -3'
miRNA:   3'- gAAAAUUGUGgUUGCGGU------UGUUg---CCG- -5'
11182 5' -45.4 NC_002816.1 + 66903 0.75 0.956228
Target:  5'- uUUUUGGCGCCAACuuuGCCAGCAcacuuuuuuuGCcgGGCg -3'
miRNA:   3'- gAAAAUUGUGGUUG---CGGUUGU----------UG--CCG- -5'
11182 5' -45.4 NC_002816.1 + 48655 0.74 0.967522
Target:  5'- ---aUAAUACCAGCGCCuACAAUGa- -3'
miRNA:   3'- gaaaAUUGUGGUUGCGGuUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 115086 0.73 0.976578
Target:  5'- -aUUUAACggugACCGAUGCCGACAACa-- -3'
miRNA:   3'- gaAAAUUG----UGGUUGCGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 50206 0.73 0.981485
Target:  5'- ---aUGugGCCAACGaCGACGAccCGGCg -3'
miRNA:   3'- gaaaAUugUGGUUGCgGUUGUU--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 110263 0.71 0.995504
Target:  5'- aCUUUUucGACAaCGACGCCcaaGugGACGGUa -3'
miRNA:   3'- -GAAAA--UUGUgGUUGCGG---UugUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 6858 0.71 0.995504
Target:  5'- --gUUGACG--AGCGCCAuCAGCGGUg -3'
miRNA:   3'- gaaAAUUGUggUUGCGGUuGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 105703 0.7 0.997763
Target:  5'- -----uACACCGuuCGCCugacCGGCGGCa -3'
miRNA:   3'- gaaaauUGUGGUu-GCGGuu--GUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 115336 0.69 0.998474
Target:  5'- -----uACGCCAAagauuacauUGUgGACAGCGGCa -3'
miRNA:   3'- gaaaauUGUGGUU---------GCGgUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 10093 0.69 0.998983
Target:  5'- --gUUGGCGagaCAGCGCCAcuguuACAAUGGa -3'
miRNA:   3'- gaaAAUUGUg--GUUGCGGU-----UGUUGCCg -5'
11182 5' -45.4 NC_002816.1 + 56699 0.69 0.999178
Target:  5'- ---aUAACGCCuccuccaacuACGCCAcCAgaaauuGCGGCa -3'
miRNA:   3'- gaaaAUUGUGGu---------UGCGGUuGU------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 91510 0.68 0.999671
Target:  5'- ----aAACACuCAACGaaaCCAAgAACGGUg -3'
miRNA:   3'- gaaaaUUGUG-GUUGC---GGUUgUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.